View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10301_1D_high_4 (Length: 493)
Name: NF10301_1D_high_4
Description: NF10301_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10301_1D_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 1 - 478
Target Start/End: Original strand, 23333370 - 23333847
Alignment:
| Q |
1 |
atccaccgcactggttgcaaatttgttatactttttgggagtattacacatagctagaggcaaactcctaaaatgttcgcaatttatcttatgccctgtc |
100 |
Q |
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||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
23333370 |
atccaccacactggttgcaaatttgttataccttttgggagtattacacatagctagaggcaaactcctaaaatgttcgcaatttatcttatgccccatc |
23333469 |
T |
|
| Q |
101 |
gtgcgcatcttcgtaatgacgacattaagcaagccaacgaaatcatttgaattagggattttgtccaacgtaattcagcatattataatgattgtttcat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
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| T |
23333470 |
gtgcgcatcttcgtaatgacgacattaagcaagccaacgaaatcatttgaattagggattttgtccaacgtaagtcagcatattataatgattgttccat |
23333569 |
T |
|
| Q |
201 |
cagaaagcagttgacatataaaaaatcacttacagttgcggtctcaagctctgcataatatgtattcagcaatcgcatctcttgaagggaaagctcatca |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23333570 |
cagaaagcagttgacatataaaaaatcacttacagttgcggtctcaagctctgcataatatgtattcagcaatcgcatctcttgaagggaaagctcatca |
23333669 |
T |
|
| Q |
301 |
gcaacacgaacaacagttcctgaggtaacgacaatgtgtacatttttcctggtaaatcatgacacaatatatcaaaacagcaaaaaattacataaaacaa |
400 |
Q |
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|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23333670 |
gcaacacgaacaacagttcctgaggcaacgacaatgtgtacatttttcctggtaaatcatgacacaatatatcaaaacagcaaaaaattacataaaacaa |
23333769 |
T |
|
| Q |
401 |
acttatcaacctctttgggggagtactgcttcagctgcattctggcacacaattttatcggtcaacttcgtgatgtcc |
478 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
23333770 |
acttatcaacctcttggggggagtactgcttcagctgcattccggcacacaattttatcggtcaacttcgttatgtcc |
23333847 |
T |
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