View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10301_1D_low_1 (Length: 953)
Name: NF10301_1D_low_1
Description: NF10301_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10301_1D_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 767; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 767; E-Value: 0
Query Start/End: Original strand, 15 - 911
Target Start/End: Original strand, 39989481 - 39990377
Alignment:
| Q |
15 |
gacatcatcgttgttttgaagtcaatgttgaaaattatgatgaaatattgacttgaaaatgtgagtagtttagcctatttataaattgtctataaataaa |
114 |
Q |
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| T |
39989481 |
gacatcatcgttgttttgaagtcaatgttgaaaattatgatgaaatattgacttgaaaatgtgagtagtttagcctatttataaattgtctataaataaa |
39989580 |
T |
|
| Q |
115 |
gnnnnnnnacatcattatttgagatcaccaaaagagagaactcttagaaaaatataagagataatggttgagagcctttgcgtaagaaattagggttggg |
214 |
Q |
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| T |
39989581 |
gtttttttacatcattatttgagatcaccaaaagagagaacttttagaaaaatgtaagagataatggttgagagcttttgtgtaagaaattagggttggg |
39989680 |
T |
|
| Q |
215 |
aacacatttaaacaccttgtgtagagagatttcatacaaagaaggattcaagtttttcctcttttgtcttcttaaaagatcttcatgtggattgagagaa |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39989681 |
aacacatttaaacaccttgtgtagagagatttcatacaaagaaggatttaagtttttcctcttttgtcttcttaaaagatcttcatgtggattgagagaa |
39989780 |
T |
|
| Q |
315 |
agaacacatgcgtagaaattagagtttactattaaagaatgtatannnnnnnaacttctttgtatctcttgtaaagacacattaataatgaattaaagag |
414 |
Q |
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| T |
39989781 |
ataacacatgcctagaaattagagtttactattaaagaatgtatatttttttaacttctttgtatctcttgtaaagacccattaataatgaattaaagag |
39989880 |
T |
|
| Q |
415 |
ttgattgcatgttttctcctccctcatacgcaagtcaatttgggcagagttaagtaaataatattgatgtgtttgtcccttgtctttgttctttgctttg |
514 |
Q |
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| T |
39989881 |
ttgatcgtatgttttctcctccctcatacgcaaatcaatttggacagagttgagtagataatattggtgcgtttgtcccttgtttttgttctttgctttg |
39989980 |
T |
|
| Q |
515 |
attgtggtcttgcaataaatttacgtcgttaaatttattcttggttgaatatcattttgactgattagttgctgattgtcattgttatttgcttcacata |
614 |
Q |
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||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
39989981 |
attgtggtcttgcaataaatttatgttgttaaatttattcttggttgaatattattttgactgattagttgttgattgtcattgttatttgcttcacata |
39990080 |
T |
|
| Q |
615 |
ttgtcttgttggtttaacacaagtgttcatattcactacacacctcaatataaagtttattttaggcttctcaacattgggtccgccgtgtctggatctt |
714 |
Q |
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| T |
39990081 |
ttgtcttgttggtttaacacaagtgttcatattcactacacacctcaatataaagtttattttaggcttctcaacattgggtccgccgtgtctggatctt |
39990180 |
T |
|
| Q |
715 |
gcttttctcatccgaaattgcaaagctgcgaaaatttggagtttgttttccaaactaggaacatgtgggctcttgtgttgactataacactatcgtagat |
814 |
Q |
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| T |
39990181 |
gcttttctcatccgaaattgcaaagctgcgaaaatttggagtttgttttccaaactaggaacatgtgggctcttgtgttgactataacactatcgtagat |
39990280 |
T |
|
| Q |
815 |
gcatcacgttctgtaagctttttgttctagtgaattatgaagattttcttttacctatctcttcagtttcttttttgttggtaaaaagctcttcagc |
911 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39990281 |
gcatcacgttctgtaagctttttgttccagtgaattatgaagattttcttttacctatctcttcagtttcttttttgttggtaaaaagctcttcagc |
39990377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 593 - 626
Target Start/End: Original strand, 38754316 - 38754349
Alignment:
| Q |
593 |
tcattgttatttgcttcacatattgtcttgttgg |
626 |
Q |
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| T |
38754316 |
tcattgttatttacttcacatattgtcttgttgg |
38754349 |
T |
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