View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10301_1D_low_10 (Length: 295)
Name: NF10301_1D_low_10
Description: NF10301_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10301_1D_low_10 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 13 - 295
Target Start/End: Original strand, 22198403 - 22198685
Alignment:
| Q |
13 |
catcatggtaattgatgtgtgactttgcctcgtggcaatgctaaatttgtcaacatgaggtgttgtgatcagtttcaaattgtgcgtaaggttgaagaaa |
112 |
Q |
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| T |
22198403 |
catcatggtaattgatgtgtgactttaccttgtggcagtgctaaatttgtcaacatgaggtgttgtgatcggtttcaaattgcgcgcaaggttgaagaaa |
22198502 |
T |
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| Q |
113 |
ttaaataagatttaggtaaaatcaatggcggtatcgaaagtaagtcttcttccgaacaaaaactaagtagttctacataaaactcagatgtggcatggac |
212 |
Q |
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| T |
22198503 |
ttaaacaagatttaggtaaaatcaatggcggtaccgaaagtaagtcttcttccgaacaaaaactaagtggttctacaaaaaacccagatgtggcatggat |
22198602 |
T |
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| Q |
213 |
gagtatgacccctccacacatctattatccgagtcaaactgaaattgtgggtttcaaagtcccaagtgataaattgattggtt |
295 |
Q |
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| T |
22198603 |
gagtatgacccctccacagatctattatccgggtcaaactgaaattgtgggtttcaaagcccaaagtgataaattgattggtt |
22198685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 13 - 295
Target Start/End: Original strand, 22195647 - 22195928
Alignment:
| Q |
13 |
catcatggtaattgatgtgtgactttgcctcgtggcaatgctaaatttgtcaacatgaggtgttgtgatcagtttcaaattgtgcgtaaggttgaagaaa |
112 |
Q |
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|||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||| |
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| T |
22195647 |
catcatggtaattgatgtgtgactttacctcgtggcagtgctaaatttgtcaacatgaggtgttgtgatcggtttcaaattgcgcgcaaggttgaagaaa |
22195746 |
T |
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| Q |
113 |
ttaaataagatttaggtaaaatcaatggcggtatcgaaagtaagtcttcttccgaacaaaaactaagtagttctacataaaactcagatgtggcatggac |
212 |
Q |
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| T |
22195747 |
ttaaacaatatttaggtaaaatcaatcacggtaccgaaagtaagtcttcttccgaacaaaaactaagtagttctaaaagaaacccaggtatggcat-gat |
22195845 |
T |
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| Q |
213 |
gagtatgacccctccacacatctattatccgagtcaaactgaaattgtgggtttcaaagtcccaagtgataaattgattggtt |
295 |
Q |
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| T |
22195846 |
gagtatgacccctccacatatctattatccgggtcaaactgaaattgtgggtttcaaagtccaaagtgataaattgattggtt |
22195928 |
T |
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