View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10301_1D_low_16 (Length: 248)

Name: NF10301_1D_low_16
Description: NF10301_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10301_1D_low_16
NF10301_1D_low_16
[»] chr7 (11 HSPs)
chr7 (13-240)||(661056-661283)
chr7 (15-93)||(22088209-22088287)
chr7 (144-181)||(22080390-22080427)
chr7 (130-181)||(20338458-20338509)
chr7 (13-88)||(22080477-22080552)
chr7 (132-182)||(20351628-20351678)
chr7 (144-181)||(22063176-22063213)
chr7 (144-181)||(22069645-22069682)
chr7 (144-177)||(22088131-22088164)
chr7 (49-89)||(15572347-15572387)
chr7 (130-182)||(20126623-20126675)
[»] chr4 (1 HSPs)
chr4 (130-184)||(2910531-2910585)


Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 13 - 240
Target Start/End: Original strand, 661056 - 661283
Alignment:
Q  13 tgaaaattcttacgtttgttgtctccggaaggaagtacaccaccttataaatgtcggttgaactatcataaccaaatttgagattagaatagtgaactag 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  661056 tgaaaattcttacgtttgttgtctccggaaggaagtacaccaccttataaatgtcggttgaactatcataaccaaatttgagattagaatagtgaactag 661155  T
Q  113 accgtcaacacgacaagaccctagttttttagatattgtccttgtggccgggttccaaaaacgaagccacatttcgtatccgttggtgaaagaaaaacct 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  661156 accgtcaacacgacaagaccctagttttttagatattgtccttgtggccgggttccaaaaacgaagccacatttggtatccgttggtgaaagaaaaacct 661255  T
Q  213 tgcaaacaaagcaatccattgcaagaac 240  Q
    ||||||||||||||||||||||||||||    
T  661256 tgcaaacaaagcaatccattgcaagaac 661283  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 22088287 - 22088209
Alignment:
Q  15 aaaattcttacgtttgttgtctccggaaggaagtacaccaccttataaatgtcggttgaactatcataaccaaatttga 93  Q
    |||| |||||| ||||||||||| |||  ||| ||||||||||||||| | || |||||| ||||||||||||| ||||    
T  22088287 aaaactcttacatttgttgtctctggagtgaaatacaccaccttataagtttctgttgaattatcataaccaaacttga 22088209  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 181
Target Start/End: Complemental strand, 22080427 - 22080390
Alignment:
Q  144 gatattgtccttgtggccgggttccaaaaacgaagcca 181  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  22080427 gatattgtccttgtggctgggttccaaaaacgaagcca 22080390  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 181
Target Start/End: Complemental strand, 20338509 - 20338458
Alignment:
Q  130 accctagttttttagatattgtccttgtggccgggttccaaaaacgaagcca 181  Q
    |||||| ||||  ||||||| |||||||||| ||||||||||||||||||||    
T  20338509 accctaattttgcagatattttccttgtggcagggttccaaaaacgaagcca 20338458  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 22080552 - 22080477
Alignment:
Q  13 tgaaaattcttacgtttgttgtctccggaaggaagtacaccaccttataaatgtcggttgaactatcataaccaaa 88  Q
    |||||| ||||||||||||||| |  |||  ||| ||||||||||||||| | || |||||| |||||||||||||    
T  22080552 tgaaaactcttacgtttgttgtttttggagtgaaatacaccaccttataagtttctgttgaattatcataaccaaa 22080477  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 182
Target Start/End: Complemental strand, 20351678 - 20351628
Alignment:
Q  132 cctagttttttagatattgtccttgtggccgggttccaaaaacgaagccac 182  Q
    |||||||||| ||||||||||||||||||  |||||||||| |||| ||||    
T  20351678 cctagtttttcagatattgtccttgtggcttggttccaaaagcgaatccac 20351628  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 181
Target Start/End: Complemental strand, 22063213 - 22063176
Alignment:
Q  144 gatattgtccttgtggccgggttccaaaaacgaagcca 181  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  22063213 gatattatccttgtggctgggttccaaaaacgaagcca 22063176  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 181
Target Start/End: Complemental strand, 22069682 - 22069645
Alignment:
Q  144 gatattgtccttgtggccgggttccaaaaacgaagcca 181  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  22069682 gatattatccttgtggctgggttccaaaaacgaagcca 22069645  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 177
Target Start/End: Complemental strand, 22088164 - 22088131
Alignment:
Q  144 gatattgtccttgtggccgggttccaaaaacgaa 177  Q
    |||||||||||||||||||||||||||| |||||    
T  22088164 gatattgtccttgtggccgggttccaaacacgaa 22088131  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 15572347 - 15572387
Alignment:
Q  49 acaccaccttataaatgtcggttgaactatcataaccaaat 89  Q
    |||||||||| ||| ||||||||||| ||||||||||||||    
T  15572347 acaccaccttgtaagtgtcggttgaattatcataaccaaat 15572387  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 20126623 - 20126675
Alignment:
Q  130 accctagttttttagatattgtccttgtggccgggttccaaaaacgaagccac 182  Q
    |||||| ||||| |||||||| || |||||| || ||||||||||||||||||    
T  20126623 accctaatttttcagatattgcccatgtggctggattccaaaaacgaagccac 20126675  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 184
Target Start/End: Complemental strand, 2910585 - 2910531
Alignment:
Q  130 accctagttttttagatattgtccttgtggccgggttccaaaaacgaagccacat 184  Q
    |||||| ||| |||||||||||||||||||| |||||||| ||||| ||||||||    
T  2910585 accctaatttattagatattgtccttgtggcagggttccacaaacggagccacat 2910531  T

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