View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10301_1D_low_19 (Length: 241)
Name: NF10301_1D_low_19
Description: NF10301_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10301_1D_low_19 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 21 - 241
Target Start/End: Original strand, 4783181 - 4783401
Alignment:
| Q |
21 |
acaactgatatattcaccaagtctatcaaaaaggtccatattttaaaactgagaagaaagctaggtgttgtagcttttgaaagtttaaattaagaaagca |
120 |
Q |
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| T |
4783181 |
acaactgatatattcaccaagtctatcaaaaaggtccatattttaaaactgagaagaaagctaggtgttgtagcttttgaaagtttaaattaagaaagca |
4783280 |
T |
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| Q |
121 |
tgttgagattaataattcaagcttaggtgtatatatcaattagtttaagttagttaattagctgtgccctatgcaactaactttctgtgttttaaggctc |
220 |
Q |
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||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
4783281 |
tgttgagattaataattcaagcttaggtgcatataacaattagtttaagttagttagttagctgtgccctatgcaactaactttctgtgttttaaggctt |
4783380 |
T |
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| Q |
221 |
agtttgttgacactatagcag |
241 |
Q |
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||||||||||||||||||||| |
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| T |
4783381 |
agtttgttgacactatagcag |
4783401 |
T |
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