View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10301_1D_low_2 (Length: 830)
Name: NF10301_1D_low_2
Description: NF10301_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10301_1D_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 489; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 91 - 719
Target Start/End: Complemental strand, 53788868 - 53788240
Alignment:
| Q |
91 |
tatggtattgatgaatcatacaaaaaggcctagatgtgtgggtggagcgaacgtgtaaggagattcaaaagtgttgggtcacgaggaggatgatcctccg |
190 |
Q |
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| T |
53788868 |
tatggtattgatgaatcatacaaaaaggcctagatgtgtgggtggagcgaacgtgtaaggagattcaaaagtgttgggtcacgaggaggataatcctccg |
53788769 |
T |
|
| Q |
191 |
gactccccatcttgacacaaaggtggtatcttacatcatgatttaataagaatttgatcggtt-tttgtgttgaaagtctttctatcaatgtgttttgac |
289 |
Q |
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| T |
53788768 |
gactccccatctttttgcaaaggtggtatcttacatgatgatttaataagaatttgatcggttctttgtgttgaaagtctttctatcacagtgttttgat |
53788669 |
T |
|
| Q |
290 |
ggcgtgctctgctgaatgtcacaccaacgatgcaagtaagtgtatgtaaatgaaaaaacttccttgagtgatagcataatgaattgacatacttatattt |
389 |
Q |
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| T |
53788668 |
ggcgtgctccactgaatgtcacaccaacggtgcaagtaagtgtatgtagatgaaaaaacttccttaagtgggagcataatgaattgacatacttatattt |
53788569 |
T |
|
| Q |
390 |
atacatgagacgaagattgttgtgtagaaagtgtgaattaaaagtttcaccttacttnnnnnnntggggattgaattttataaattataggatccataaa |
489 |
Q |
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| T |
53788568 |
acacatgagaagaagattgttgtgtagaaagtgtgaattaaaagtttcacgttacttagaaaaatggggattgaattttataaattataggacccataaa |
53788469 |
T |
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| Q |
490 |
attcaatatcttaaggttttatgttaaagtgtggtgttcgactcacttatattgggatccccggttctcacacttcacatcatagcaaagatagagtgag |
589 |
Q |
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| T |
53788468 |
-tccaatatcttaaggttttaggttaaagtgtggtgttggactcacttatattgggattcccggttctcacacttcacatcatagcaaagatagagtgag |
53788370 |
T |
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| Q |
590 |
tgggtaccattactcaccacgttttcttagccaaagttcaactctattagtttaagatgatgaatgaaacactgcaatacaaccgagtacttactagcaa |
689 |
Q |
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| T |
53788369 |
tgggtaccattactcaccacggtttctcagccaaagttcaactctattagtttaagatgatgaatgaaacactgcaatacaaccgagtacttactagcaa |
53788270 |
T |
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| Q |
690 |
ataatactaatgtatttccatggatttatg |
719 |
Q |
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| T |
53788269 |
ataatactaatgtatttccatggatttatg |
53788240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 768 - 823
Target Start/End: Complemental strand, 53788241 - 53788186
Alignment:
| Q |
768 |
tgtaatggaagagaatgtcaaattgaatcaagatgctggaagtgattaaatattgg |
823 |
Q |
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| T |
53788241 |
tgtaatagaagagaatgttaaattgaatcaagatgctggaagtgattaaatattgg |
53788186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 748 - 813
Target Start/End: Complemental strand, 5273237 - 5273172
Alignment:
| Q |
748 |
gttccacccctgaacgagattgtaatggaagagaatgtcaaattgaatcaagatgctggaagtgat |
813 |
Q |
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| T |
5273237 |
gttccatcccttaatgagattgtaatggaagagaatgtgagaatgaatgaagattctgcaagtgat |
5273172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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