View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10301_1D_low_21 (Length: 238)
Name: NF10301_1D_low_21
Description: NF10301_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10301_1D_low_21 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 46 - 237
Target Start/End: Complemental strand, 3659545 - 3659355
Alignment:
| Q |
46 |
aaatgtcgttacattatattcatgtaaggctttgtctaccctttgatttgtaatgtttgattgtattctaggagaatttgattggacttagattgtttag |
145 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| | |
|
|
| T |
3659545 |
aaatgtcattacattatattcatgtaaggctttgtctaccctttgatttgtaatgtttgattggattctaggacaatttgattggacttagattgtttgg |
3659446 |
T |
|
| Q |
146 |
taattggtagatctcatctgtgtgtctaattggcatatgattcataaatggatttgttatgttccactttaattggcatttagataattgtg |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||| |||||| |||||||||| |||| |
|
|
| T |
3659445 |
taattggtagatctcatctgtgtgtctaattggcatttggtt-ataaatggatttgttatgttccacttcaattggaatttagataagtgtg |
3659355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 46 - 220
Target Start/End: Complemental strand, 3653279 - 3653106
Alignment:
| Q |
46 |
aaatgtcgttacattatattcatgtaaggctttgtctaccctttgatttgtaatgtttgattgtattctaggagaatttgattggacttagattgtttag |
145 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| | |
|
|
| T |
3653279 |
aaatgtcgttacattatattcatgtaaggttttgtttaccctttgatttgtaatgtttgatt--attctaggagaatttgactggacttagattgtttgg |
3653182 |
T |
|
| Q |
146 |
taattggtagatctcatctgtgtgtctaattggcatatgattc-ataaatggatttgttatgttccactttaattg |
220 |
Q |
| |
|
||| |||||||||||||||| ||||||||||||||| || ||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
3653181 |
taactggtagatctcatctgcgtgtctaattggcatttggttctataaatggatttgttatgttccacttcaattg |
3653106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 3657245 - 3657199
Alignment:
| Q |
87 |
tttgatttgtaatgtttgattgtattctaggagaatttgattggact |
133 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
3657245 |
tttgatttgtaatgtttgactgtattctaggagaacttgattggact |
3657199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University