View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10301_1D_low_25 (Length: 224)

Name: NF10301_1D_low_25
Description: NF10301_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10301_1D_low_25
NF10301_1D_low_25
[»] chr3 (3 HSPs)
chr3 (35-224)||(32368336-32368525)
chr3 (10-80)||(32368534-32368605)
chr3 (112-189)||(18645741-18645818)
[»] chr4 (2 HSPs)
chr4 (10-200)||(26076368-26076559)
chr4 (112-189)||(5721971-5722048)
[»] chr2 (2 HSPs)
chr2 (85-207)||(12370874-12370994)
chr2 (127-224)||(3461271-3461368)
[»] chr7 (3 HSPs)
chr7 (77-224)||(5243245-5243396)
chr7 (154-224)||(35898170-35898240)
chr7 (127-206)||(296559-296638)
[»] chr1 (2 HSPs)
chr1 (15-158)||(4958422-4958566)
chr1 (112-207)||(44536499-44536594)
[»] scaffold0038 (1 HSPs)
scaffold0038 (154-207)||(48835-48888)
[»] chr6 (1 HSPs)
chr6 (154-207)||(28248673-28248726)
[»] chr8 (1 HSPs)
chr8 (94-194)||(1183007-1183107)


Alignment Details
Target: chr3 (Bit Score: 126; Significance: 4e-65; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 35 - 224
Target Start/End: Complemental strand, 32368525 - 32368336
Alignment:
Q  35 tgaagtttggcctgatgtttccagctactaacaagaaaagagaggctaagctagagggatactctgattcagactgatgtggagatagaatggataggag 134  Q
    |||||||||||  ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  32368525 tgaagtttggcacgatgtttccagctactaacaagaaaggagagtctaagctagagggatactctgattcagaccggtgtggagatagaatggataggag 32368426  T
Q  135 aagcacttatggctacctattcaaattaaatgatgatgcaatctcatggtgcactaagaaacaaccagtcactactttatcatcatgtga 224  Q
    ||| |||| ||||| |||||||||||| ||||||| |||||| |||||||||||||||| ||||||| ||||| || |||||||||||||    
T  32368425 aagtacttctggctgcctattcaaattcaatgatgctgcaatttcatggtgcactaagagacaaccaatcactgctctatcatcatgtga 32368336  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 32368605 - 32368534
Alignment:
Q  10 aatactgagaaatgtgaaagga-ccttgaagtttggcctgatgtttccagctactaacaagaaaagagaggc 80  Q
    |||||||||| ||||||||||| || ||||||||| |||||||||||||||||||||||||||| |||||||    
T  32368605 aatactgagatatgtgaaaggaaccctgaagtttgccctgatgtttccagctactaacaagaaaggagaggc 32368534  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 189
Target Start/End: Complemental strand, 18645818 - 18645741
Alignment:
Q  112 tgtggagatagaatggataggagaagcacttatggctacctattcaaattaaatgatgatgcaatctcatggtgcact 189  Q
    |||||||||  ||| ||||||||||||||||  || ||  | |||||||| ||||||| ||||||||| |||||||||    
T  18645818 tgtggagatctaattgataggagaagcactttaggttatgtgttcaaattcaatgatgctgcaatctcctggtgcact 18645741  T

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Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 10 - 200
Target Start/End: Original strand, 26076368 - 26076559
Alignment:
Q  10 aatactgagaaatgtgaaagg-accttgaagtttggcctgatgtttccagctactaacaagaaaagagaggctaagctagagggatactctgattcagac 108  Q
    |||| ||||| |||||||||| || ||||||||||||||| | ||||||||| | || ||   | |||| ||| |  |||||||||||||||||||||||    
T  26076368 aatattgagatatgtgaaaggtacattgaagtttggcctgttatttccagctgcaaataaagtaggagaagctgaattagagggatactctgattcagac 26076467  T
Q  109 tgatgtggagatagaatggataggagaagcacttatggctacctattcaaattaaatgatgatgcaatctcatggtgcactaagaaacaacc 200  Q
    || |||| ||||| |||||||||||  ||||||||||||||||||||||| || |||| || |||||||||||||||||  |||||||||||    
T  26076468 tggtgtgaagatataatggataggaagagcacttatggctacctattcaagttcaatggtgttgcaatctcatggtgcaaaaagaaacaacc 26076559  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 189
Target Start/End: Complemental strand, 5722048 - 5721971
Alignment:
Q  112 tgtggagatagaatggataggagaagcacttatggctacctattcaaattaaatgatgatgcaatctcatggtgcact 189  Q
    |||||||||  ||| ||||||||||||||||  || ||  | |||||||| ||||||| ||||||||| |||||||||    
T  5722048 tgtggagatctaattgataggagaagcactttaggttatgtgttcaaattcaatgatgctgcaatctcctggtgcact 5721971  T

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Target: chr2 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 85 - 207
Target Start/End: Original strand, 12370874 - 12370994
Alignment:
Q  85 ctagagggatactctgattcagactgatgtggagatagaatggataggagaagcacttatggctacctattcaaattaaatgatgatgcaatctcatggt 184  Q
    |||||||||||||||||||||||||| |||||||||||||||||  ||| |||||| | | ||||||||||||| || |||| || ||||||||||||||    
T  12370874 ctagagggatactctgattcagactggtgtggagatagaatgga--ggaaaagcacctctagctacctattcaagttcaatggtgctgcaatctcatggt 12370971  T
Q  185 gcactaagaaacaaccagtcact 207  Q
    |||| ||||||||||||||||||    
T  12370972 gcacaaagaaacaaccagtcact 12370994  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 127 - 224
Target Start/End: Original strand, 3461271 - 3461368
Alignment:
Q  127 gataggagaagcacttatggctacctattcaaattaaatgatgatgcaatctcatggtgcactaagaaacaaccagtcactactttatcatcatgtga 224  Q
    ||||||||||||||||  || ||  | |||||||| ||||||| |||||||||||||||||| ||||| |||||||||||| |  | |||||||||||    
T  3461271 gataggagaagcacttcaggttatgtgttcaaattcaatgatgctgcaatctcatggtgcacaaagaagcaaccagtcactgcactctcatcatgtga 3461368  T

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Target: chr7 (Bit Score: 67; Significance: 6e-30; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 77 - 224
Target Start/End: Original strand, 5243245 - 5243396
Alignment:
Q  77 aggctaagctagagggatactctgattcagactgatgtggagatagaatggataggagaagcacttatggcta----cctattcaaattaaatgatgatg 172  Q
    ||||||||||||| |||||||| ||||| ||||| |||||| | ||||||||||| |||||||||| ||| ||    | ||||||| || ||||||||||    
T  5243245 aggctaagctagaaggatactcagattctgactggtgtggatagagaatggatagaagaagcacttctggatatatacttattcaagttcaatgatgatg 5243344  T
Q  173 caatctcatggtgcactaagaaacaaccagtcactactttatcatcatgtga 224  Q
    ||||||||||||| |||||||| |||||||||| | || |||||||||||||    
T  5243345 caatctcatggtgtactaagaagcaaccagtcaatgctctatcatcatgtga 5243396  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 154 - 224
Target Start/End: Original strand, 35898170 - 35898240
Alignment:
Q  154 ttcaaattaaatgatgatgcaatctcatggtgcactaagaaacaaccagtcactactttatcatcatgtga 224  Q
    |||||||| ||||||| |||||||||||||||||| ||||| |||||||||||| |  | |||||||||||    
T  35898170 ttcaaattcaatgatgctgcaatctcatggtgcacaaagaagcaaccagtcactgcactctcatcatgtga 35898240  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 206
Target Start/End: Original strand, 296559 - 296638
Alignment:
Q  127 gataggagaagcacttatggctacctattcaaattaaatgatgatgcaatctcatggtgcactaagaaacaaccagtcac 206  Q
    ||||||||||||||||  || ||  | |||||||| ||||||| ||||||||| |||||||| ||||| |||||| ||||    
T  296559 gataggagaagcacttcaggttatgtgttcaaattcaatgatgctgcaatctcctggtgcaccaagaagcaaccaatcac 296638  T

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Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 15 - 158
Target Start/End: Complemental strand, 4958566 - 4958422
Alignment:
Q  15 tgagaaatgtgaaagg-accttgaagtttggcctgatgtttccagctactaacaagaaaagagaggctaagctagagggatactctgattcagactgatg 113  Q
    ||||| |||||||||| ||  |||||||||||||| | || ||| || | |||||  || |||| ||| | |||||||||||||||||||||||||| ||    
T  4958566 tgagacatgtgaaaggcacactgaagtttggcctgttattcccaactgcaaacaaagaaggagaagctgaactagagggatactctgattcagactggtg 4958467  T
Q  114 tggagatagaatggataggagaagcacttatggctacctattcaa 158  Q
    |||||||||||||||||| | |||||| | | |||||||||||||    
T  4958466 tggagatagaatggatagaaaaagcacctttagctacctattcaa 4958422  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 207
Target Start/End: Complemental strand, 44536594 - 44536499
Alignment:
Q  112 tgtggagatagaatggataggagaagcacttatggctacctattcaaattaaatgatgatgcaatctcatggtgcactaagaaacaaccagtcact 207  Q
    |||||||||  ||| ||||||||||||||||  || ||  | |||||||| ||||||| ||||||||| |||||||| ||||| |||||| |||||    
T  44536594 tgtggagatctaattgataggagaagcacttcaggttatgtgttcaaattcaatgatgctgcaatctcctggtgcaccaagaagcaaccaatcact 44536499  T

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Target: scaffold0038 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 48835 - 48888
Alignment:
Q  154 ttcaaattaaatgatgatgcaatctcatggtgcactaagaaacaaccagtcact 207  Q
    |||||||| ||||||| |||||| ||||||||||| ||||| ||||||||||||    
T  48835 ttcaaattcaatgatgctgcaatttcatggtgcaccaagaagcaaccagtcact 48888  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 28248673 - 28248726
Alignment:
Q  154 ttcaaattaaatgatgatgcaatctcatggtgcactaagaaacaaccagtcact 207  Q
    |||||||| ||||||| |||||| ||||||||||| ||||| ||||||||||||    
T  28248673 ttcaaattcaatgatgctgcaatttcatggtgcaccaagaagcaaccagtcact 28248726  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 194
Target Start/End: Original strand, 1183007 - 1183107
Alignment:
Q  94 tactctgattcagactgatgtggagatagaatggataggagaagcacttatggctacctattcaaattaaatgatgatgcaatctcatggtgcactaaga 193  Q
    |||||||||||||| || |||| ||||||||  |||||||||||||| | ||||||  | ||||| || ||  ||| |||||| |||||||| || ||||    
T  1183007 tactctgattcagattggtgtgaagatagaagtgataggagaagcacatctggctatgtcttcaagttcaacaatgttgcaatatcatggtgtacaaaga 1183106  T
Q  194 a 194  Q
    |    
T  1183107 a 1183107  T

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