View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10301_1D_low_3 (Length: 753)

Name: NF10301_1D_low_3
Description: NF10301_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10301_1D_low_3
NF10301_1D_low_3
[»] chr4 (41 HSPs)
chr4 (92-744)||(13228178-13228830)
chr4 (361-660)||(39974598-39974898)
chr4 (343-697)||(49953018-49953381)
chr4 (266-545)||(50814455-50814733)
chr4 (341-701)||(281670-282017)
chr4 (267-354)||(39974409-39974496)
chr4 (265-344)||(49953481-49953560)
chr4 (269-346)||(281499-281576)
chr4 (266-703)||(42729463-42729894)
chr4 (592-696)||(6560961-6561065)
chr4 (574-670)||(28475656-28475752)
chr4 (607-686)||(24183432-24183510)
chr4 (614-703)||(6554542-6554631)
chr4 (572-746)||(42757527-42757699)
chr4 (564-699)||(27741355-27741493)
chr4 (597-696)||(13230887-13230986)
chr4 (595-689)||(55050025-55050117)
chr4 (618-696)||(316508-316586)
chr4 (564-686)||(50158147-50158268)
chr4 (271-311)||(312133-312173)
chr4 (520-695)||(11559422-11559598)
chr4 (618-693)||(36697769-36697844)
chr4 (266-304)||(4281220-4281258)
chr4 (261-307)||(42757967-42758013)
chr4 (595-703)||(17675276-17675384)
chr4 (262-338)||(24183774-24183850)
chr4 (566-689)||(26289997-26290118)
chr4 (613-680)||(4237127-4237194)
chr4 (593-696)||(11560197-11560299)
chr4 (650-709)||(14265631-14265690)
chr4 (574-625)||(35308158-35308209)
chr4 (656-706)||(284322-284372)
chr4 (383-478)||(11559284-11559381)
chr4 (618-696)||(13918248-13918326)
chr4 (656-706)||(39977241-39977291)
chr4 (589-703)||(42727913-42728027)
chr4 (654-695)||(312872-312913)
chr4 (23-52)||(13228109-13228138)
chr4 (631-727)||(14266234-14266331)
chr4 (599-688)||(42756826-42756915)
chr4 (613-703)||(48683180-48683272)
[»] chr2 (37 HSPs)
chr2 (266-744)||(3395400-3395878)
chr2 (269-744)||(5788821-5789298)
chr2 (267-543)||(41754523-41754800)
chr2 (572-709)||(19040663-19040799)
chr2 (572-709)||(39839072-39839208)
chr2 (597-703)||(29977350-29977456)
chr2 (266-539)||(34722879-34723156)
chr2 (608-744)||(36720068-36720205)
chr2 (619-703)||(36727623-36727707)
chr2 (657-735)||(41754117-41754196)
chr2 (267-396)||(30638193-30638321)
chr2 (595-704)||(34425580-34425689)
chr2 (595-695)||(29651760-29651860)
chr2 (266-337)||(39406292-39406363)
chr2 (594-695)||(45659828-45659927)
chr2 (267-308)||(29978124-29978165)
chr2 (618-722)||(38796797-38796902)
chr2 (605-688)||(36729280-36729363)
chr2 (363-478)||(36729484-36729598)
chr2 (618-696)||(20106660-20106738)
chr2 (574-644)||(40599682-40599752)
chr2 (414-510)||(45658291-45658385)
chr2 (573-703)||(6466121-6466243)
chr2 (594-693)||(14873420-14873517)
chr2 (650-729)||(29975884-29975964)
chr2 (266-306)||(36729645-36729685)
chr2 (607-686)||(14868824-14868902)
chr2 (634-705)||(19994416-19994486)
chr2 (542-629)||(19994503-19994590)
chr2 (649-704)||(24967988-24968043)
chr2 (618-696)||(31963699-31963777)
chr2 (615-696)||(39403435-39403514)
chr2 (322-355)||(10999561-10999594)
chr2 (594-703)||(13439345-13439454)
chr2 (654-695)||(20443608-20443649)
chr2 (622-695)||(25546954-25547027)
chr2 (654-695)||(31967332-31967373)
[»] chr1 (25 HSPs)
chr1 (266-744)||(43387047-43387525)
chr1 (568-709)||(20306717-20306857)
chr1 (564-701)||(22636310-22636447)
chr1 (572-709)||(40946485-40946621)
chr1 (572-709)||(30001726-30001862)
chr1 (605-709)||(1992421-1992524)
chr1 (619-709)||(26531550-26531638)
chr1 (566-689)||(17006492-17006613)
chr1 (566-689)||(34159478-34159599)
chr1 (283-484)||(22636505-22636704)
chr1 (595-709)||(47783135-47783249)
chr1 (589-695)||(31089541-31089647)
chr1 (595-704)||(7844607-7844716)
chr1 (574-671)||(8313411-8313508)
chr1 (607-668)||(16851963-16852024)
chr1 (656-705)||(43385108-43385157)
chr1 (594-727)||(16853598-16853730)
chr1 (649-704)||(19065742-19065797)
chr1 (649-704)||(19113632-19113687)
chr1 (649-700)||(21469816-21469867)
chr1 (266-309)||(40946249-40946292)
chr1 (574-644)||(3838181-3838251)
chr1 (269-342)||(3838424-3838497)
chr1 (649-695)||(31088786-31088834)
chr1 (654-695)||(49880330-49880371)
[»] scaffold0159 (1 HSPs)
scaffold0159 (269-744)||(33194-33671)
[»] chr8 (41 HSPs)
chr8 (267-735)||(42797242-42797711)
chr8 (266-735)||(23141752-23142224)
chr8 (267-735)||(13756203-13756666)
chr8 (361-701)||(21588824-21589166)
chr8 (266-474)||(10901547-10901754)
chr8 (595-744)||(10901390-10901540)
chr8 (266-354)||(21589269-21589357)
chr8 (263-355)||(40114449-40114541)
chr8 (267-355)||(41529035-41529123)
chr8 (595-744)||(30254510-30254663)
chr8 (566-689)||(16313248-16313369)
chr8 (566-689)||(34800782-34800903)
chr8 (379-517)||(24481718-24481857)
chr8 (321-473)||(757816-757964)
chr8 (591-748)||(13758877-13759030)
chr8 (618-696)||(17888052-17888130)
chr8 (266-355)||(16221892-16221981)
chr8 (595-704)||(40885744-40885853)
chr8 (566-689)||(37251164-37251285)
chr8 (649-704)||(357546-357601)
chr8 (267-330)||(18432505-18432568)
chr8 (649-704)||(23683161-23683216)
chr8 (542-644)||(18431674-18431776)
chr8 (678-744)||(38292408-38292474)
chr8 (389-494)||(45527083-45527186)
chr8 (652-709)||(12158035-12158092)
chr8 (614-703)||(41527026-41527115)
chr8 (595-704)||(45247768-45247877)
chr8 (595-695)||(14376134-14376234)
chr8 (661-704)||(13758078-13758121)
chr8 (619-682)||(18953362-18953425)
chr8 (613-748)||(43215796-43215930)
chr8 (618-696)||(8358803-8358881)
chr8 (656-706)||(21586487-21586537)
chr8 (281-370)||(14373561-14373650)
chr8 (607-668)||(15277766-15277827)
chr8 (607-668)||(15458135-15458196)
chr8 (595-696)||(32916820-32916921)
chr8 (654-695)||(36754531-36754572)
chr8 (654-695)||(41528504-41528545)
chr8 (652-727)||(43216924-43216998)
[»] chr5 (23 HSPs)
chr5 (442-746)||(38015878-38016182)
chr5 (341-560)||(33014007-33014227)
chr5 (292-499)||(42312245-42312452)
chr5 (267-346)||(33014320-33014399)
chr5 (594-709)||(9012698-9012813)
chr5 (318-455)||(42313347-42313482)
chr5 (566-710)||(8128411-8128553)
chr5 (614-703)||(9024953-9025042)
chr5 (592-709)||(20966097-20966214)
chr5 (595-689)||(4062139-4062231)
chr5 (542-703)||(19910595-19910759)
chr5 (595-660)||(11770399-11770464)
chr5 (266-355)||(32259413-32259502)
chr5 (267-388)||(38016182-38016303)
chr5 (592-644)||(9048607-9048658)
chr5 (267-311)||(9022785-9022829)
chr5 (264-404)||(42955306-42955443)
chr5 (595-689)||(7332935-7333027)
chr5 (595-701)||(19318902-19319006)
chr5 (618-703)||(29865859-29865942)
chr5 (267-308)||(7333206-7333247)
chr5 (595-704)||(27594557-27594666)
chr5 (598-655)||(33013940-33013997)
[»] chr6 (27 HSPs)
chr6 (467-728)||(1599542-1599805)
chr6 (452-664)||(26894748-26894961)
chr6 (267-472)||(1594479-1594684)
chr6 (270-391)||(26894607-26894728)
chr6 (572-709)||(7428469-7428605)
chr6 (572-699)||(16279074-16279200)
chr6 (620-703)||(31737205-31737288)
chr6 (319-510)||(20873525-20873715)
chr6 (595-689)||(23410088-23410180)
chr6 (591-748)||(11554334-11554492)
chr6 (566-689)||(20872435-20872556)
chr6 (649-704)||(21984208-21984263)
chr6 (572-695)||(28365691-28365813)
chr6 (595-696)||(4031519-4031618)
chr6 (591-748)||(4852786-4852944)
chr6 (618-696)||(15878847-15878925)
chr6 (282-347)||(4029627-4029692)
chr6 (592-709)||(19660312-19660429)
chr6 (301-404)||(2976423-2976526)
chr6 (608-739)||(24175010-24175141)
chr6 (564-703)||(29214273-29214412)
chr6 (649-704)||(33350291-33350346)
chr6 (257-510)||(34516738-34516987)
chr6 (649-695)||(4791625-4791671)
chr6 (652-710)||(9452849-9452907)
chr6 (606-644)||(20874193-20874231)
chr6 (265-346)||(26597899-26597980)
[»] chr3 (39 HSPs)
chr3 (267-556)||(50332063-50332353)
chr3 (595-735)||(50331915-50332056)
chr3 (361-660)||(36095859-36096164)
chr3 (361-586)||(12746101-12746326)
chr3 (605-709)||(20934981-20935084)
chr3 (568-709)||(32976455-32976595)
chr3 (266-354)||(12746425-12746513)
chr3 (605-709)||(42400367-42400470)
chr3 (606-684)||(431968-432046)
chr3 (605-709)||(17764120-17764223)
chr3 (605-709)||(19065440-19065543)
chr3 (266-344)||(10976771-10976849)
chr3 (267-353)||(17763830-17763916)
chr3 (267-353)||(19065150-19065236)
chr3 (269-355)||(50239313-50239399)
chr3 (266-311)||(6088375-6088420)
chr3 (595-704)||(40056505-40056614)
chr3 (592-704)||(14044266-14044378)
chr3 (566-689)||(19817404-19817525)
chr3 (595-703)||(32970448-32970556)
chr3 (618-696)||(20779566-20779644)
chr3 (614-721)||(34849788-34849896)
chr3 (414-513)||(6088027-6088126)
chr3 (592-703)||(25225317-25225428)
chr3 (649-704)||(30171172-30171227)
chr3 (613-696)||(37837526-37837609)
chr3 (665-726)||(10020165-10020227)
chr3 (266-406)||(12125841-12125979)
chr3 (607-655)||(6435915-6435963)
chr3 (594-693)||(9263468-9263565)
chr3 (594-727)||(14249239-14249371)
chr3 (649-704)||(20788479-20788534)
chr3 (542-625)||(21320393-21320476)
chr3 (594-695)||(6437545-6437644)
chr3 (594-644)||(11655434-11655484)
chr3 (406-440)||(20935255-20935289)
chr3 (661-703)||(40417868-40417910)
chr3 (607-668)||(9261465-9261526)
chr3 (608-677)||(12125579-12125648)
[»] scaffold0036 (2 HSPs)
scaffold0036 (489-746)||(50164-50422)
scaffold0036 (326-451)||(50440-50558)
[»] scaffold0380 (3 HSPs)
scaffold0380 (414-560)||(14333-14480)
scaffold0380 (634-748)||(14532-14647)
scaffold0380 (269-341)||(14235-14307)
[»] chr7 (17 HSPs)
chr7 (267-472)||(15721438-15721643)
chr7 (605-709)||(43989681-43989784)
chr7 (542-677)||(17510234-17510369)
chr7 (542-677)||(17542845-17542980)
chr7 (264-464)||(6679453-6679652)
chr7 (595-693)||(45406686-45406784)
chr7 (564-677)||(17474750-17474863)
chr7 (564-677)||(17578351-17578464)
chr7 (574-670)||(38788964-38789060)
chr7 (554-691)||(4120006-4120143)
chr7 (267-342)||(29502481-29502556)
chr7 (606-684)||(42080874-42080952)
chr7 (566-689)||(29912542-29912663)
chr7 (595-688)||(20181327-20181420)
chr7 (621-709)||(22528920-22529008)
chr7 (265-311)||(17475013-17475059)
chr7 (265-311)||(17578155-17578201)
[»] scaffold0216 (1 HSPs)
scaffold0216 (593-695)||(29168-29270)
[»] scaffold1750 (1 HSPs)
scaffold1750 (605-709)||(268-371)
[»] scaffold1345 (1 HSPs)
scaffold1345 (605-701)||(1847-1942)
[»] scaffold0169 (2 HSPs)
scaffold0169 (295-473)||(1988-2162)
scaffold0169 (606-701)||(2278-2376)
[»] scaffold0114 (2 HSPs)
scaffold0114 (264-355)||(34470-34561)
scaffold0114 (614-703)||(37041-37130)
[»] scaffold0284 (4 HSPs)
scaffold0284 (592-696)||(6424-6528)
scaffold0284 (267-355)||(2998-3086)
scaffold0284 (618-696)||(7590-7668)
scaffold0284 (654-695)||(2331-2372)
[»] scaffold0012 (1 HSPs)
scaffold0012 (558-689)||(31023-31152)
[»] scaffold0191 (1 HSPs)
scaffold0191 (595-686)||(5143-5233)
[»] scaffold0155 (1 HSPs)
scaffold0155 (332-510)||(22749-22929)
[»] scaffold0053 (1 HSPs)
scaffold0053 (572-684)||(30999-31107)
[»] scaffold0268 (1 HSPs)
scaffold0268 (558-689)||(19862-19991)
[»] scaffold0119 (1 HSPs)
scaffold0119 (595-689)||(40575-40667)
[»] scaffold0051 (1 HSPs)
scaffold0051 (614-728)||(12572-12687)
[»] scaffold0021 (1 HSPs)
scaffold0021 (273-344)||(129359-129430)
[»] scaffold0050 (1 HSPs)
scaffold0050 (266-311)||(11962-12007)
[»] scaffold0024 (1 HSPs)
scaffold0024 (564-728)||(47123-47288)
[»] scaffold1315 (1 HSPs)
scaffold1315 (606-746)||(510-652)
[»] scaffold1293 (1 HSPs)
scaffold1293 (606-746)||(1419-1561)
[»] scaffold1737 (1 HSPs)
scaffold1737 (606-644)||(524-562)
[»] scaffold1590 (1 HSPs)
scaffold1590 (269-346)||(1450-1525)
[»] scaffold0211 (1 HSPs)
scaffold0211 (614-703)||(18449-18538)
[»] scaffold0074 (1 HSPs)
scaffold0074 (650-703)||(32745-32798)


Alignment Details
Target: chr4 (Bit Score: 581; Significance: 0; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 92 - 744
Target Start/End: Original strand, 13228178 - 13228830
Alignment:
Q  92 attgtgggggattggtataggagagaaagtgattttctgtttttattttcaatggaatttcaaagtgttatttgtcctagctaatttgtcatgactcttg 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13228178 attgtgggggattggtataggagagaaagtgattttctgtttttattttcaatggaatttcaaagtcttatttgtcctagctaatttgtcatgactcttg 13228277  T
Q  192 tttcataatgtttatatattaagaagtgtgtgcggaaaaaatgcatgataagattacctttttggattagtaataactagtatggacacccgtgccaaac 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |    
T  13228278 tttcataatgtttatatattaagaagtgtgtgcggaaaaaatgcatgataggattaccttgttggattagtaataactagtatggacacccgtgccaagc 13228377  T
Q  292 acgggttagaatttcgtcattttcaatggagagaatattgtgatgtatcaagtgtcacttaaatatcaacattggataagatattggaggttgaagaaca 391  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13228378 acgggctagaatttcgtcattttcaatggagagaatattgtgatgtatcaagtgtcacttaaatatcaacattggataagatattggaggttgaagaaca 13228477  T
Q  392 aataagtgaaaaataaatcatgtacttaagtcttaaaattttgaatgaaaatgtaacatcattctcacttgtgtgattgctctttctgcaatgcgtcgat 491  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||    
T  13228478 aataagtgaaaaataaatcatatccttaagtcttaaaattttgaatgaaaatgtaacatcattttcacttgtgtgattgctctttctgcaatgcgttgat 13228577  T
Q  492 tcacacaagtgttggctccccataagttccaatggtgatatcatatccgcttcaacatttttggggagcataagtggtttttggtggtggatcgcagaca 591  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13228578 tcacacaagtgttggctccccataagtttcaatggtgatatcatatccgcttcaacatttttggggagcataagtggtttttggtggtggatcgcagaca 13228677  T
Q  592 caaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgag 691  Q
    |||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  13228678 caaaaagtctcatacttaatggagagatgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatagtagatgttgagaaacatataagtgag 13228777  T
Q  692 atgactcatatatataattcttaagattttgggtgaaattgtgatgtccatct 744  Q
    ||||||||||||| |||||||||| |||||||||||| |||||||||| ||||    
T  13228778 atgactcatatatctaattcttaaaattttgggtgaagttgtgatgtcaatct 13228830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 361 - 660
Target Start/End: Original strand, 39974598 - 39974898
Alignment:
Q  361 cattggataagatattggaggttgaagaacaaataagtgaaaaataaatcatgtacttaagtcttaaaattttgaatgaaaatgtaacatcattctcact 460  Q
    |||||||||| ||||||||||| |||||||||||||||| |||| ||| |   |||| ||| |||||||||||| | ||| |||  |||||||||||||     
T  39974598 cattggataaaatattggaggtcgaagaacaaataagtggaaaaaaaaactcatactaaagccttaaaattttggaagaagatgcgacatcattctcacc 39974697  T
Q  461 tgtgtgattgctctttctgcaatgcgtcgattcacacaagtgttggctcccca-taagttccaatggtgatatcatatccgcttcaacatttttggggag 559  Q
    |||||| ||| | ||||||||||| ||||| |||||||||||||| ||||||  |||||||||||||||||||||||| |||||||||||||||||||||    
T  39974698 tgtgtggttgttttttctgcaatgtgtcgaatcacacaagtgttgtctcccccgtaagttccaatggtgatatcatatacgcttcaacatttttggggag 39974797  T
Q  560 cataagtggtttttggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatg 659  Q
       ||||| ||  |||||||||||||| |||||||||||| || || ||||| |||||||| |||||||| || |||| |||||||||||| |||| |||    
T  39974798 tggaagtgcttcgtggtggtggatcgcggacacaaagagtatcgtatttaattgagagatggtaatgtgtcaagtgtgggttaaaataacatattgaatg 39974897  T
Q  660 c 660  Q
    |    
T  39974898 c 39974898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 343 - 697
Target Start/End: Complemental strand, 49953381 - 49953018
Alignment:
Q  343 gtgtcacttaaatatcaacattggataagatattggaggttgaagaacaaataagtgaaaaataaa------tcatgtacttaagtcttaaaattttgaa 436  Q
    |||||| |||||| ||| |||||||||| ||||| ||||| ||||||||||||||||||| | |||      |||| |||| ||| |||||||||||| |    
T  49953381 gtgtcatttaaatctcatcattggataaaatattagaggtcgaagaacaaataagtgaaagaaaaaaaaaactcatatactaaagccttaaaattttgga 49953282  T
Q  437 tgaaaatgtaacatcattctcacttgtgtgattgctctttctgcaatgcgtcgattcacacaagtgttggctcccca-taagttccaatggtgatatcat 535  Q
    |||| | |  |||||||||||||||||||| ||| | |||||||||||  |||| |||||||||||||| ||||||  ||||| |||| |||||||||||    
T  49953281 tgaagacgcgacatcattctcacttgtgtggttgttttttctgcaatgtttcgaatcacacaagtgttgtctcccccgtaagtcccaacggtgatatcat 49953182  T
Q  536 atccgcttcaacatttttggggagcataagtggtttttggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgttaaatg 635  Q
    || ||||||||||||||||||||||  ||||| ||  |||||||||||| | ||||| |||||||||||| ||||| ||||||||||||||||| || ||    
T  49953181 atacgcttcaacatttttggggagcggaagtgcttcgtggtggtggatcacggacacgaagagtctcatatttaattgagagatgttaatgtgtcaagtg 49953082  T
Q  636 tgagttaaaataacacattggat-gca-atagtagatgttgagaaacatataagtgagatgact 697  Q
    ||  |||||||||||||||| || ||| ||| ||||| ||||  || |||||||||||||||||    
T  49953081 tggattaaaataacacattgaatggcatataatagatattgaacaatatataagtgagatgact 49953018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 266 - 545
Target Start/End: Original strand, 50814455 - 50814733
Alignment:
Q  266 aactagtatggacacccgtgccaaacacgggttagaatttcgtcattttcaatggagagaatattgtgatgtatcaagtgtcacttaaatatcaacattg 365  Q
    |||||| ||||||||||||||||| |||||| ||||||||||||||  | || ||||||||| |||| | |||| || |||   |||||| |||| ||||    
T  50814455 aactagcatggacacccgtgccaagcacgggctagaatttcgtcatccttaagggagagaatgttgtaaagtattaaatgtatgttaaatctcaatattg 50814554  T
Q  366 gataagatattggaggttgaagaacaaataagtgaaaaataaatcatgtacttaagtcttaaaattttgaatgaaaatgtaacatcattctcacttgtgt 465  Q
    ||||| |||||||||||||||||  ||||||||||||| |||| ||  |||||||| ||| |||||||| ||||| ||||||||||||| ||||| ||||    
T  50814555 gataaaatattggaggttgaagagtaaataagtgaaaa-taaa-cacatacttaagactttaaattttggatgaagatgtaacatcattatcactcgtgt 50814652  T
Q  466 gattgctctttctgcaatgcgtcgattcacacaagtgttggct-ccccataagttccaatggtgatatcatatccgcttca 545  Q
    ||||||||||| ||||||| ||||||||||||||| ||||||| |||||||||| ||||||||||||||||||| ||||||    
T  50814653 gattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtcccaatggtgatatcatatctgcttca 50814733  T

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Target: chr4; HSP #5
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 341 - 701
Target Start/End: Original strand, 281670 - 282017
Alignment:
Q  341 aagtgtcacttaaatatcaacattggataagatattggaggttgaagaacaaataagtgaaaaataaatcatgtacttaagtcttaaaattttgaatgaa 440  Q
    |||||||| |||||| ||| |||||||||| ||| ||||||| ||||||||||||||||||||| || |||| |||| ||| |||||||||||| |||||    
T  281670 aagtgtcatttaaatctcatcattggataaaatactggaggtcgaagaacaaataagtgaaaaaaaactcatatactaaagccttaaaattttggatgaa 281769  T
Q  441 aatgtaacatcattctcacttgtgtgattgctctttctgcaatgcgtcgattcacacaagtgttggctcccca-taagttccaatggtgatatcatatcc 539  Q
     |||  |||||||||||||||||||| ||| | |||||||||||                ||||| ||||||  ||||| |||||||||||||||||| |    
T  281770 gatgcgacatcattctcacttgtgtggttgttttttctgcaatg----------------tgttgtctcccccgtaagtcccaatggtgatatcatatac 281853  T
Q  540 gcttcaacatttttggggagcataagtggtttttggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgttaaatgtgag 639  Q
    ||||||||||||||| |||||  ||||| | | |||||||||||||| ||||| ||||||||| || ||||| ||||||||||||||||| || |||| |    
T  281854 gcttcaacatttttgtggagcggaagtgctgtgtggtggtggatcgcggacacgaagagtctcgtatttaattgagagatgttaatgtgtcaagtgtggg 281953  T
Q  640 ttaaaataacacattggatgc--aatagtagatgttgagaaacatataagtgagatgactcata 701  Q
    |||||||||||||||| || |   ||| || || ||||  ||||||| ||||||||||||||||    
T  281954 ttaaaataacacattgaattccatataatatatattgaacaacatattagtgagatgactcata 282017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 267 - 354
Target Start/End: Original strand, 39974409 - 39974496
Alignment:
Q  267 actagtatggacacccgtgccaaacacgggttagaatttcgtcattttcaatggagagaatattgtgatgtatcaagtgtcacttaaa 354  Q
    |||||| || ||||||||||||| |||||| |||||||||| ||| |  ||||||||||||||||||||||||||||||||| |||||    
T  39974409 actagtttgaacacccgtgccaagcacgggctagaatttcggcatatctaatggagagaatattgtgatgtatcaagtgtcaattaaa 39974496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 265 - 344
Target Start/End: Complemental strand, 49953560 - 49953481
Alignment:
Q  265 taactagtatggacacccgtgccaaacacgggttagaatttcgtcattttcaatggagagaatattgtgatgtatcaagt 344  Q
    |||||||| ||||||||||||| || || |||||||||||||||||| || |||||| ||||||||||||||||||||||    
T  49953560 taactagtttggacacccgtgctaagcatgggttagaatttcgtcatatttaatggaaagaatattgtgatgtatcaagt 49953481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 269 - 346
Target Start/End: Original strand, 281499 - 281576
Alignment:
Q  269 tagtatggacacccgtgccaaacacgggttagaatttcgtcattttcaatggagagaatattgtgatgtatcaagtgt 346  Q
    |||| |||||||||||| ||| |||||| |||||||||||||| || ||||||||| |||||||||||||||||||||    
T  281499 tagtttggacacccgtgtcaagcacgggctagaatttcgtcatatttaatggagaggatattgtgatgtatcaagtgt 281576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 266 - 703
Target Start/End: Complemental strand, 42729894 - 42729463
Alignment:
Q  266 aactagtatggacacccgtgccaaacacgggttagaatttcgtcattttcaatggagagaatattgtgatgtatcaagtgtcacttaaatatcaacattg 365  Q
    ||||||||||||||||||||||||  |||||||  |||||||| ||  |  | |||||||||||| |||| |||||||||| | ||||||  || || ||    
T  42729894 aactagtatggacacccgtgccaagaacgggttgaaatttcgttatacttgagggagagaatattatgatttatcaagtgtgagttaaatccca-cactg 42729796  T
Q  366 gataagatattggaggttgaagaacaaataagtgaaaaataaatcatgtacttaagtcttaaaattttgaatgaaaatgtaacatcattctcacttgtgt 465  Q
     |||  | | || |||||||| |||||| ||| |||||||   | || |||||||||||||||||  || ||||| |||| | || ||||| || ||| |    
T  42729795 aatataaaagtgtaggttgaacaacaaacaagagaaaaat---ttatatacttaagtcttaaaatgctggatgaagatgtgatataattcttacatgtat 42729699  T
Q  466 gattgctctttctgcaatgcgtcgattcacacaagtgttggctcccc-ataagttccaatggtgatatcatatc-cgcttcaacatttttggggagcata 563  Q
    ||  | ||||||| ||||| |||||| ||||    |||||||||||| | |||  |||| |||| ||||||| | |  ||||||||| | ||| | |       
T  42729698 gaccgatctttctccaatgtgtcgatccacatcgttgttggctcccccaaaaggcccaacggtggtatcataactcagttcaacattgtggggtaacggg 42729599  T
Q  564 agtggtttttggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaat 663  Q
    ||||||| ||||||||| ||| | |||||  ||||| | |  |||||||||    |||||| |||| ||  ||||||||||||   ||| || |||||||    
T  42729598 agtggttcttggtggtgaatcacggacaccgagagtttgacgcttaatggaat--tgttaacgtgtcaa--gtgagttaaaattcaacaatgtatgcaat 42729503  T
Q  664 agtagatgttgagaaacatataagtgagatgactcatata 703  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  42729502 agtacatgttgagaaacatataagtgagatgactcatata 42729463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 592 - 696
Target Start/End: Original strand, 6560961 - 6561065
Alignment:
Q  592 caaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgag 691  Q
    |||||||||||| | |||| ||||||||| |||||| | |||||||||||||| |  || ||||||| ||| |||||||||| |  ||||||||||||||    
T  6560961 caaagagtctcacagttaagggagagatgctaatgtatcaaatgtgagttaaagttccatattggatacaaaagtagatgttaaacaacatataagtgag 6561060  T
Q  692 atgac 696  Q
    |||||    
T  6561061 atgac 6561065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 574 - 670
Target Start/End: Complemental strand, 28475752 - 28475656
Alignment:
Q  574 ggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagat 670  Q
    ||||||||||| |  ||||  ||||||| | |||||||||||||||||||||||||||| ||| |||||||||  ||||||| |||||| |||||||    
T  28475752 ggtggtggatcacgaacacggagagtctgacacttaatggagagatgttaatgtgttaagtgtaagttaaaatttcacattgtatgcaagagtagat 28475656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 607 - 686
Target Start/End: Complemental strand, 24183510 - 24183432
Alignment:
Q  607 ttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataa 686  Q
    |||||||||||||||||||||||||| ||| |||||||||  ||||||| |||||| |||||||| |||| |||||||||    
T  24183510 ttaatggagagatgttaatgtgttaagtgtaagttaaaatttcacattgtatgcaagagtagatg-tgagcaacatataa 24183432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 614 - 703
Target Start/End: Original strand, 6554542 - 6554631
Alignment:
Q  614 agagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagatgactcatata 703  Q
    |||||||||||||||| || |||||||||||||   | | |||||| || ||||||| ||||  ||||||||||||||||||||||||||    
T  6554542 agagatgttaatgtgtcaagtgtgagttaaaattctatagtggatggaagagtagattttgaataacatataagtgagatgactcatata 6554631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 572 - 746
Target Start/End: Complemental strand, 42757699 - 42757527
Alignment:
Q  572 ttggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattgg--atgcaatagtaga 669  Q
    ||||||||||||| |||||||  ||||||||    ||||| ||||||||||||||||| || ||||||| ||| |   |||||||  |||||| ||||||    
T  42757699 ttggtggtggatcacagacacggagagtctc----ttaatagagagatgttaatgtgtcaattgtgagtaaaagtttaacattggatatgcaagagtaga 42757604  T
Q  670 tgttgagaaacatataagtgagatgactcatatatataat-tcttaagattttgggtgaaattgtgatgtccatctca 746  Q
    |||||| |||||||| || ||||| | |||||||  |||| ||||| || |||||||||||  |||||||| ||||||    
T  42757603 tgttgaaaaacatatgagggagatta-tcatatacctaatgtcttaggactttgggtgaaaaggtgatgtcgatctca 42757527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 564 - 699
Target Start/End: Complemental strand, 27741493 - 27741355
Alignment:
Q  564 agtggtttttggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaat 663  Q
    ||||||| ||| || |||||  || |||| |||||||||| | |||||||||| || ||||| | |||||||| |||||||||   ||||||||| |||     
T  27741493 agtggttcttgatgttggattacacacacgaagagtctcacatttaatggagatatattaatattttaaatgtaagttaaaattctacattggatacaag 27741394  T
Q  664 agta---gatgttgagaaacatataagtgagatgactca 699  Q
    ||||   ||||||||| ||||||| ||||||||||||||    
T  27741393 agtaatagatgttgagcaacatatgagtgagatgactca 27741355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 597 - 696
Target Start/End: Original strand, 13230887 - 13230986
Alignment:
Q  597 agtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagatgac 696  Q
    ||||||| |||||| | ||| |||||||  |||||| ||||| |||||||  |||||  ||| |||||||||||||||||| |||||||| |||||||||    
T  13230887 agtctcacacttaaggaagatatgttaaaatgttaattgtgatttaaaatttcacataagatacaatagtagatgttgagacacatataaatgagatgac 13230986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 595 - 689
Target Start/End: Original strand, 55050025 - 55050117
Alignment:
Q  595 agagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtg 689  Q
    |||||||| ||||| | ||||| |||||||||||| || || |||||||| |  ||||||||||| || ||||||||||||| ||||||||||||    
T  55050025 agagtctcgtacttgagggagaaatgttaatgtgtcaagtgcgagttaaagt--cacattggatgtaagagtagatgttgagtaacatataagtg 55050117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 618 - 696
Target Start/End: Original strand, 316508 - 316586
Alignment:
Q  618 atgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagatgac 696  Q
    |||||||||||| ||||| |||||||||| | ||||| |||| || ||||||| ||||| ||||||||||| |||||||    
T  316508 atgttaatgtgtcaaatgcgagttaaaattatacattagatgaaagagtagattttgagcaacatataagtcagatgac 316586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 564 - 686
Target Start/End: Original strand, 50158147 - 50158268
Alignment:
Q  564 agtggtttttggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaat 663  Q
    ||||||| |||||||| |||| | | |||| ||||| | | ||||||||||||||||||||||||| || | ||||||||| |  ||||||  ||||||     
T  50158147 agtggttcttggtggtcgatcacgg-cacagagagtttgacacttaatggagagatgttaatgtgtcaagtatgagttaaagtttcacattttatgcaag 50158245  T
Q  664 agtagatgttgagaaacatataa 686  Q
    |||| |||||||| |||||||||    
T  50158246 agtatatgttgagcaacatataa 50158268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 271 - 311
Target Start/End: Original strand, 312133 - 312173
Alignment:
Q  271 gtatggacacccgtgccaaacacgggttagaatttcgtcat 311  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  312133 gtatggacacccgtgccaagcacgggttagaatttcgtcat 312173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 520 - 695
Target Start/End: Original strand, 11559422 - 11559598
Alignment:
Q  520 ccaatggtgatatcatatc-cgcttcaacatttttggggagcataagtggtttttggtggtggatcgcagacacaaagagtctcatacttaatggagaga 618  Q
    ||||| ||||||| ||||| ||| ||||||||   |||||||   ||||||||||| ||| ||||| || ||| | ||||||| | ||||| || |||||    
T  11559422 ccaattgtgatatgatatctcgcatcaacattgcaggggagcgggagtggtttttgttggaggatcacaaacatagagagtctgacacttattgaagaga 11559521  T
Q  619 tgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagatga 695  Q
    ||||||| ||| || ||||| |||||||   | |||| |||||| |||| |||||||  |||||||||||| |||||    
T  11559522 tgttaatatgtaaagtgtgacttaaaatttgatattgtatgcaagagtaaatgttgaacaacatataagtgtgatga 11559598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 618 - 693
Target Start/End: Original strand, 36697769 - 36697844
Alignment:
Q  618 atgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagat 693  Q
    |||||||||| | |||||||||||||| |  |||||||||||||| |||||||||| |  ||||||||||| ||||    
T  36697769 atgttaatgtatcaaatgtgagttaaagttccacattggatgcaaaagtagatgttaaacaacatataagttagat 36697844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 266 - 304
Target Start/End: Complemental strand, 4281258 - 4281220
Alignment:
Q  266 aactagtatggacacccgtgccaaacacgggttagaatt 304  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  4281258 aactagtatggacacccgtgccaagcacgggttagaatt 4281220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 261 - 307
Target Start/End: Complemental strand, 42758013 - 42757967
Alignment:
Q  261 gtaataactagtatggacacccgtgccaaacacgggttagaatttcg 307  Q
    |||| |||||||||||||||||||||||| |||||| ||||||||||    
T  42758013 gtaacaactagtatggacacccgtgccaagcacgggctagaatttcg 42757967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 595 - 703
Target Start/End: Complemental strand, 17675384 - 17675276
Alignment:
Q  595 agagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagatg 694  Q
    |||||||||||||| |  || ||| ||||| |||| || ||||| ||||| |  ||||||||||||| || ||||||||||  ||||||||||||| ||     
T  17675384 agagtctcatacttgagagaaagaagttaacgtgtcaagtgtgatttaaagttccacattggatgcattaatagatgttgaacaacatataagtgatata 17675285  T
Q  695 actcatata 703  Q
    || ||||||    
T  17675284 acccatata 17675276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 262 - 338
Target Start/End: Complemental strand, 24183850 - 24183774
Alignment:
Q  262 taataactagtatggacacccgtgccaaacacgggttagaatttcgtcattttcaatggagagaatattgtgatgta 338  Q
    |||||||||| ||||||||||||||||| |||||| ||||||| | |||   | || ||||| ||||||||||||||    
T  24183850 taataactagcatggacacccgtgccaagcacgggctagaattccatcaaacttaaaggagataatattgtgatgta 24183774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 566 - 689
Target Start/End: Complemental strand, 26290118 - 26289997
Alignment:
Q  566 tggtttttggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatag 665  Q
    |||||| ||||||| |||| || |  || |||||||| ||||| | ||||| || ||||||||| || || |||||||| |  ||||||| ||| || ||    
T  26290118 tggtttatggtggtagatctcatatgcagagagtctcctactttagggagaaatattaatgtgtcaagtgcgagttaaagt--cacattgtatgtaagag 26290021  T
Q  666 tagatgttgagaaacatataagtg 689  Q
    ||||||||||| ||||||||||||    
T  26290020 tagatgttgagtaacatataagtg 26289997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 613 - 680
Target Start/End: Complemental strand, 4237194 - 4237127
Alignment:
Q  613 gagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaac 680  Q
    |||||||||||||||| ||  ||| |||||||||  ||||||| |||||| ||| |||||||||||||    
T  4237194 gagagatgttaatgtgctacgtgtaagttaaaattccacattgaatgcaagagtggatgttgagaaac 4237127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 593 - 696
Target Start/End: Original strand, 11560197 - 11560299
Alignment:
Q  593 aaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgaga 692  Q
    |||||||| || |||||| |||||||||||||||||| |   |||||||||| | | ||||||||||||| |||| || ||||  || ||||| ||||||    
T  11560197 aaagagtcccacacttaagggagagatgttaatgtgtcatgggtgagttaaacttatacattggatgcaagagtatatattga-caatatatacgtgaga 11560295  T
Q  693 tgac 696  Q
    ||||    
T  11560296 tgac 11560299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 650 - 709
Target Start/End: Complemental strand, 14265690 - 14265631
Alignment:
Q  650 acattggatgcaatagtagatgttgagaaacatataagtgagatgactcatatatataat 709  Q
    |||||||||||||| ||||||| ||||||| ||||||| || || |||||||||| ||||    
T  14265690 acattggatgcaattgtagatggtgagaaaaatataagagaaataactcatatatctaat 14265631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 574 - 625
Target Start/End: Original strand, 35308158 - 35308209
Alignment:
Q  574 ggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaat 625  Q
    ||||||||||| ||||||| |||||||| | ||||||||||||||| |||||    
T  35308158 ggtggtggatcacagacacgaagagtctgacacttaatggagagatattaat 35308209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 656 - 706
Target Start/End: Original strand, 284322 - 284372
Alignment:
Q  656 gatgcaatagtagatgttgagaaacatataagtgagatgactcatatatat 706  Q
    |||| |||||||||||||||| |||||||| |||||||||| || ||||||    
T  284322 gatggaatagtagatgttgagtaacatatatgtgagatgacacacatatat 284372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 383 - 478
Target Start/End: Original strand, 11559284 - 11559381
Alignment:
Q  383 tgaagaacaaataagtgaaaa--ataaatcatgtacttaagtcttaaaattttgaatgaaaatgtaacatcattctcacttgtgtgattgctctttct 478  Q
    |||| ||||||||||||||||  | ||| | | |||||||| |||||||||||| ||||| ||||   | |||| ||||||||||| |||||||||||    
T  11559284 tgaacaacaaataagtgaaaagaaaaaaacttatacttaagccttaaaattttggatgaagatgttgtagcattttcacttgtgtggttgctctttct 11559381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 618 - 696
Target Start/End: Original strand, 13918248 - 13918326
Alignment:
Q  618 atgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagatgac 696  Q
    |||||||||||| |||||||||||||  | | |||||||||| || ||||||| || |  ||||||||| |||||||||    
T  13918248 atgttaatgtgtcaaatgtgagttaacgttatacattggatggaagagtagattttcaacaacatataattgagatgac 13918326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 656 - 706
Target Start/End: Original strand, 39977241 - 39977291
Alignment:
Q  656 gatgcaatagtagatgttgagaaacatataagtgagatgactcatatatat 706  Q
    |||| |||||||||||||||  ||||||||||||||||||| || ||||||    
T  39977241 gatggaatagtagatgttgaataacatataagtgagatgacacacatatat 39977291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 589 - 703
Target Start/End: Complemental strand, 42728027 - 42727913
Alignment:
Q  589 acacaaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagt 688  Q
    ||||||||||||||| | ||||  |||| |||||||||||| || ||| | ||||| |   ||||| ||||||| |||||||||| | |||  |||||||    
T  42728027 acacaaagagtctcacaattaagtgagatatgttaatgtgtcaattgttacttaaagttttacatttgatgcaagagtagatgttcataaatgtataagt 42727928  T
Q  689 gagatgactcatata 703  Q
    ||| ||||| |||||    
T  42727927 gaggtgactaatata 42727913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 654 - 695
Target Start/End: Original strand, 312872 - 312913
Alignment:
Q  654 tggatgcaatagtagatgttgagaaacatataagtgagatga 695  Q
    ||||||||| |||| ||||| |||||||||||||||||||||    
T  312872 tggatgcaaaagtaaatgttaagaaacatataagtgagatga 312913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 52
Target Start/End: Original strand, 13228109 - 13228138
Alignment:
Q  23 agtttaatatgtttataagattgagatggg 52  Q
    ||||||||||||||||||||||||||||||    
T  13228109 agtttaatatgtttataagattgagatggg 13228138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 631 - 727
Target Start/End: Complemental strand, 14266331 - 14266234
Alignment:
Q  631 aaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagatgactcatatatataa-ttcttaagattttgggtga 727  Q
    |||||||| ||||| | | | |||||||| |||||||||  ||||  |||| |||||||||||||| ||||||  ||| |||||||||||| ||||||    
T  14266331 aaatgtgaattaaagttatatattggatgaaatagtagaatttgaacaacaaataagtgagatgacccatataactaatttcttaagatttagggtga 14266234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 599 - 688
Target Start/End: Complemental strand, 42756915 - 42756826
Alignment:
Q  599 tctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagt 688  Q
    ||||| |||||| |||||||||||||||||| |  ||||||| ||| |   ||||||||||||| | || || ||||| |||||||||||    
T  42756915 tctcacacttaagggagagatgttaatgtgtcatttgtgagtaaaacttctacattggatgcaagactatatattgagcaacatataagt 42756826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 613 - 703
Target Start/End: Original strand, 48683180 - 48683272
Alignment:
Q  613 gagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgag--aaacatataagtgagatgactcatata 703  Q
    ||||||||||||||||| |||||||||||||| |  ||||||| | |||| ||| || ||||||  | ||| | |||||| ||||||||||||    
T  48683180 gagagatgttaatgtgtcaaatgtgagttaaagtttcacattgaaagcaagagtggaagttgagcaacacacaaaagtgatatgactcatata 48683272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 380; Significance: 0; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 266 - 744
Target Start/End: Complemental strand, 3395878 - 3395400
Alignment:
Q  266 aactagtatggacacccgtgccaaacacgggttagaatttcgtcattttcaatggagagaatattgtgatgtatcaagtgtcacttaaatatcaacattg 365  Q
    |||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||    
T  3395878 aactagtatggacacccgtgccaagcacgggctagaattacgtcattttcaatggagagaatat-gtgatatatcaagtgtcagttaaatatcaacattg 3395780  T
Q  366 gataagatattggaggttgaagaacaaataagtgaaaaataaatcatgtacttaagtcttaaaattttgaatgaaaatgtaacatcattctcacttgtgt 465  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  3395779 gataaaatattggaggttgaagaacaaataagtaaaaaataaatcatatacttaagtcttaaaattttggatgaaaatgtaacatcattttcacttgtgt 3395680  T
Q  466 gattgctctttctgcaatgcgtcgattcacacaagtgttggctccccataagttccaatggtgatatcatatccgcttcaacatttttggggagcataag 565  Q
    ||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3395679 gattgctctttctgcaacgtgtcgattcacacaagtgttgtctccccataagttccaatggtgatatcatatccgcttcaacatttttggggagcataag 3395580  T
Q  566 tggtttttggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatag 665  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||| ||| |||||||||    
T  3395579 tggtttttggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgtcaggtgtgagttaaaataacactttgaatgcaatag 3395480  T
Q  666 tagatgttgagaaacatataagtgagatgactcatatatataat-tcttaagattttgggtgaaattgtgatgtccatct 744  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||| ||||    
T  3395479 tagatgttgagaaacatataagtgagatgactcatatatctaatgtcttaagattttgggtgaagttgtgatgtcaatct 3395400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 269 - 744
Target Start/End: Complemental strand, 5789298 - 5788821
Alignment:
Q  269 tagtatggacacccgtgccaaacacgggttagaatttcgtcattttcaatggagagaatattgtgatgtatcaagtgtcacttaaatatcaacattggat 368  Q
    |||||| |||| ||||| |||||||  |||||||||||||||  |||||| || |||||||||| ||||||||||||||| |||||| |||| |||||||    
T  5789298 tagtatagacatccgtgacaaacacatgttagaatttcgtcaccttcaattgaaagaatattgtaatgtatcaagtgtcagttaaatctcaatattggat 5789199  T
Q  369 aagatattggaggttgaagaacaaataagtgaaaaataaa-tcatgtacttaagtcttaaaattttgaatgaaaatgtaacatcattctcacttgtgtga 467  Q
    || | ||||||||||||||||||||||||||||||||| | | ||  | ||||||||| || ||||| ||||| ||||||||||||||||||||||||||    
T  5789198 aaaacattggaggttgaagaacaaataagtgaaaaatagacttattcagttaagtcttgaagttttggatgaagatgtaacatcattctcacttgtgtga 5789099  T
Q  468 ttgctctttctgcaatgcgtcg--attcacacaagtgttggctccccataagttccaatggtgatatcatatccgcttcaacatttttggggagcataag 565  Q
    ||||||||||||||||| |||   |||||||||||||||||||||||||||||  ||||| |||||||||| ||||||||||||||||||| |||  |||    
T  5789098 ttgctctttctgcaatgtgtcatcattcacacaagtgttggctccccataagtctcaatgttgatatcatacccgcttcaacatttttgggaagcggaag 5788999  T
Q  566 tggtttttggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatag 665  Q
    |||||  ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  5788998 tggttcgtggtggtggatcgcagacacagagagtctcatacttaatgaagagatgttaatgtgtcaaatgtgagttaaaataacacattgaatgcaatag 5788899  T
Q  666 tagatgttgagaaacatataagtgagatgactcatatatataattcttaagattttgggtgaaattgtgatgtccatct 744  Q
    ||||||||||  ||||||||||||||||||||||||| || |  ||||||||||||||||||| |||||||||| ||||    
T  5788898 tagatgttgaacaacatataagtgagatgactcatatcta-atgtcttaagattttgggtgaagttgtgatgtcaatct 5788821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 267 - 543
Target Start/End: Complemental strand, 41754800 - 41754523
Alignment:
Q  267 actagtatggacacccgtgccaaacacgggttagaatttcgtcattttcaatggagagaatattgtgatgtatcaagtgtcacttaaatatcaacattgg 366  Q
    ||||| ||||||||||||||||| |||||| ||||||||||||||  | || ||||||||| |||| | |||| || |||   |||||| |||| |||||    
T  41754800 actagcatggacacccgtgccaagcacgggctagaatttcgtcatccttaagggagagaatgttgtaaagtattaaatgtatgttaaatctcaatattgg 41754701  T
Q  367 ataagatattggaggttgaagaacaaataagtgaaaaataaatcatgtacttaagtcttaaaattttgaatgaaaatgtaacatcattctcacttgtgtg 466  Q
    |||| |||||||||||||||||  |||||||||||||  || |||| |||||||| ||| |||||||| ||||| ||||||||||||| ||||| |||||    
T  41754700 ataaaatattggaggttgaagagtaaataagtgaaaataaactcatatacttaagactttaaattttggatgaagatgtaacatcattatcactcgtgtg 41754601  T
Q  467 attgctctttctgcaatgcgtcgattcacacaagtgttggct-ccccataagttccaatggtgatatcatatccgctt 543  Q
    |||||||||| ||||||| ||||||||||||||| ||||||| |||||||||| ||||||||||||||||||| ||||    
T  41754600 attgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtcccaatggtgatatcatatctgctt 41754523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 572 - 709
Target Start/End: Original strand, 19040663 - 19040799
Alignment:
Q  572 ttggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatg 671  Q
    |||||||||||   || |||||||||  || | ||||||||||||||||||||||||| || |||||||||||||   | |||| ||||||||||||||     
T  19040663 ttggtggtggactacaaacacaaagatcctgacacttaatggagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtagat- 19040761  T
Q  672 ttgagaaacatataagtgagatgactcatatatataat 709  Q
     |||||||||| |||||||||||||||| ||| |||||    
T  19040762 atgagaaacatttaagtgagatgactcacatacataat 19040799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 572 - 709
Target Start/End: Complemental strand, 39839208 - 39839072
Alignment:
Q  572 ttggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatg 671  Q
    |||||||||||   || |||||||||  || | |||||| |||||||||||||||||| || |||||||||||||   | |||| ||||||||||||||     
T  39839208 ttggtggtggactacaaacacaaagatcctgacacttaacggagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtagat- 39839110  T
Q  672 ttgagaaacatataagtgagatgactcatatatataat 709  Q
     |||||||||| |||||||||||||||| ||| |||||    
T  39839109 atgagaaacatttaagtgagatgactcacatacataat 39839072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 597 - 703
Target Start/End: Complemental strand, 29977456 - 29977350
Alignment:
Q  597 agtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagatgac 696  Q
    ||||||||| || | |||| ||||||||||||| || ||| ||||||| |  ||||||| |||||| ||| |||||||| |||||||||||||| |||||    
T  29977456 agtctcataattgagggagtgatgttaatgtgtcaagtgtaagttaaagttccacattgaatgcaagagtggatgttgataaacatataagtgatatgac 29977357  T
Q  697 tcatata 703  Q
    |||||||    
T  29977356 tcatata 29977350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 266 - 539
Target Start/End: Original strand, 34722879 - 34723156
Alignment:
Q  266 aactagtatggacacccgtgccaaacacgggttagaatttcgtcattttcaatggagagaatattgtgatgtatcaagtgtcacttaaatatcaacattg 365  Q
    |||||||||||||| ||||| ||  |||| |||| |||||| |||| || || ||| | ||||||  ||||||||| |||| | |||||    || ||||    
T  34722879 aactagtatggacagccgtgtcatgcacgagttaaaatttcatcatatttaagggaaataatattacgatgtatcatgtgttagttaaagtcaaatattg 34722978  T
Q  366 gataagatattggaggttgaagaacaaataagtgaaaaataaa----tcatgtacttaagtcttaaaattttgaatgaaaatgtaacatcattctcactt 461  Q
    ||||| ||| ||||||||  | ||||||||||||||| | |||    |||| ||||||||||||| ||||||||||||  ||||   |||||| ||||||    
T  34722979 gataaaatagtggaggtttgacaacaaataagtgaaagaaaaaaaactcatatacttaagtcttacaattttgaatgatgatgtggtatcattttcactt 34723078  T
Q  462 gtgtgattgctctttctgcaatgcgtcgattcacacaagtgttggctcccc-ataagttccaatggtgatatcatatcc 539  Q
    || || ||| |||||||  ||||  ||||| ||||  |||||||||||||| ||||| ||||| | || ||||||||||    
T  34723079 gtatggttgttctttctctaatg-ttcgatccacattagtgttggctcccctataaggtccaacgatggtatcatatcc 34723156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 608 - 744
Target Start/End: Original strand, 36720068 - 36720205
Alignment:
Q  608 taatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagatgactcatatatata 707  Q
    ||||| |||||||||||||||| || |||||||||||||   ||| ||  ||||||| || |||||||| ||||||||||||||||||  ||||||  ||    
T  36720068 taatgaagagatgttaatgtgtcaagtgtgagttaaaattctacaatgtgtgcaataatatatgttgagcaacatataagtgagatgatccatataccta 36720167  T
Q  708 at-tcttaagattttgggtgaaattgtgatgtccatct 744  Q
    || ||| |||| ||||||||||  ||||||||| ||||    
T  36720168 atgtctgaagactttgggtgaagatgtgatgtcaatct 36720205  T

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Target: chr2; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 619 - 703
Target Start/End: Complemental strand, 36727707 - 36727623
Alignment:
Q  619 tgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagatgactcatata 703  Q
    ||||||||||| || ||||| |||||||  |||||| ||||||| |||||||||| ||||||||||| ||||||||||| |||||    
T  36727707 tgttaatgtgtcaattgtgacttaaaatttcacattagatgcaaaagtagatgttaagaaacatatatgtgagatgactaatata 36727623  T

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Target: chr2; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 657 - 735
Target Start/End: Complemental strand, 41754196 - 41754117
Alignment:
Q  657 atgcaatagtagatgttgagaaacatataagtgagatgactcatatatataat-tcttaagattttgggtgaaattgtga 735  Q
    |||||||||||||||||||||||||||||  ||| ||||||||| ||| |||| | ||||||||||||||||| ||||||    
T  41754196 atgcaatagtagatgttgagaaacatatatatgatatgactcatgtatctaatgtattaagattttgggtgaagttgtga 41754117  T

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Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 267 - 396
Target Start/End: Complemental strand, 30638321 - 30638193
Alignment:
Q  267 actagtatggacacccgtgccaaacacgggttagaatttcgtcattttcaatggagagaatattgtgatgtatcaagtgtcacttaaatatcaacattgg 366  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||| ||  | ||||| |||  | |||||||||||||||   |||||  |||| ||||     
T  30638321 actagtatggacacccgtgccaagcacgggtta-aatttcgtcatatttgagggagaaaatgctttgatgtatcaagtgttggttaaagttcaatattga 30638223  T
Q  367 ataagatattggaggttgaagaacaaataa 396  Q
    |||||| | ||||||||||| || ||||||    
T  30638222 ataagaaagtggaggttgaacaataaataa 30638193  T

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Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 595 - 704
Target Start/End: Complemental strand, 34425689 - 34425580
Alignment:
Q  595 agagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagatg 694  Q
    |||||||||||||| |  || ||| ||||| |||| || ||||| ||||| |  |||||||||||||||| ||||||||||  ||||||||||||| ||     
T  34425689 agagtctcatacttgagagaaagaggttaacgtgtcaagtgtgatttaaagttccacattggatgcaataatagatgttgaacaacatataagtgatata 34425590  T
Q  695 actcatatat 704  Q
    ||||||||||    
T  34425589 actcatatat 34425580  T

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Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 595 - 695
Target Start/End: Original strand, 29651760 - 29651860
Alignment:
Q  595 agagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagatg 694  Q
    ||||| |||||||| | | || ||||||||||||| |||||||||||||| |  ||||||| |||||| ||||||||||||  ||||| ||||||| |||    
T  29651760 agagtttcatacttgaggaagtgatgttaatgtgtcaaatgtgagttaaagtttcacattgaatgcaagagtagatgttgaacaacatctaagtgatatg 29651859  T
Q  695 a 695  Q
    |    
T  29651860 a 29651860  T

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Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 266 - 337
Target Start/End: Complemental strand, 39406363 - 39406292
Alignment:
Q  266 aactagtatggacacccgtgccaaacacgggttagaatttcgtcattttcaatggagagaatattgtgatgt 337  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||  |  | |||||||||||| ||||||    
T  39406363 aactagtatggacacccgtgccaaacacgggctagaatttcatcatagttgagggagagaatattatgatgt 39406292  T

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Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 594 - 695
Target Start/End: Original strand, 45659828 - 45659927
Alignment:
Q  594 aagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagat 693  Q
    |||||||||| |||||  ||||||||||||| |||| || ||||| | ||| | ||| ||||||||||  ||||||| |||| |||||||||||||||||    
T  45659828 aagagtctcacacttatgggagagatgttaaagtgtcaattgtgactcaaagttacaaattggatgca--agtagatcttgaaaaacatataagtgagat 45659925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 267 - 308
Target Start/End: Complemental strand, 29978165 - 29978124
Alignment:
Q  267 actagtatggacacccgtgccaaacacgggttagaatttcgt 308  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  29978165 actagtatggacacccgtgccaaacacgggctagaatttcgt 29978124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 618 - 722
Target Start/End: Original strand, 38796797 - 38796902
Alignment:
Q  618 atgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagatgactcatatatataat-tcttaag 716  Q
    |||||| ||||| || ||||| |||||||  || |||||||| || |||| |||||||||||||||||||||| |||||| |||| | ||||  ||||||    
T  38796797 atgttagtgtgtcaactgtgacttaaaatttcatattggatgaaagagtatatgttgagaaacatataagtgaaatgactaatatgtctaatgccttaag 38796896  T
Q  717 attttg 722  Q
    ||||||    
T  38796897 attttg 38796902  T

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Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 605 - 688
Target Start/End: Complemental strand, 36729363 - 36729280
Alignment:
Q  605 acttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagt 688  Q
    |||| ||||||| |||||||| ||| || ||||||| |||||  ||||||| |||||| ||||||||||||  |||||||||||    
T  36729363 actttatggagatatgttaatttgtcaagtgtgagtaaaaatttcacattgtatgcaagagtagatgttgaacaacatataagt 36729280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 363 - 478
Target Start/End: Complemental strand, 36729598 - 36729484
Alignment:
Q  363 ttggataagatattggaggttgaagaacaaataagtgaaaaataaatcatgtacttaagtcttaaaattttgaatgaaaatgtaacatcattctcacttg 462  Q
    |||||||  ||| ||||||| | | |||||||||||| |||| || | || ||||| ||||||||||||||||||||| ||||   ||||||||||  ||    
T  36729598 ttggatagaataatggaggtcggacaacaaataagtggaaaa-aacttatatacttgagtcttaaaattttgaatgaatatgtggtatcattctcagctg 36729500  T
Q  463 tgtgattgctctttct 478  Q
    |||||||| |||||||    
T  36729499 tgtgattgttctttct 36729484  T

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Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 618 - 696
Target Start/End: Complemental strand, 20106738 - 20106660
Alignment:
Q  618 atgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagatgac 696  Q
    |||||||||||| |||||||||||||  | | |||||||||| || ||||||| ||||  || ||||||||||||||||    
T  20106738 atgttaatgtgtcaaatgtgagttaacgttatacattggatggaagagtagattttgaataaaatataagtgagatgac 20106660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 574 - 644
Target Start/End: Complemental strand, 40599752 - 40599682
Alignment:
Q  574 ggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaa 644  Q
    |||||| |||| ||||  ||||||||||||||||| | | ||||||||||||||||||| ||| |||||||    
T  40599752 ggtggtagatcacagatgcaaagagtctcatacttgaggaagagatgttaatgtgttaagtgtaagttaaa 40599682  T

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Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 414 - 510
Target Start/End: Original strand, 45658291 - 45658385
Alignment:
Q  414 tacttaagtcttaaaattttgaatgaaaatgtaacatcattctcacttgtgtgattgctctttctgcaatgcgtcgattcacacaagtgttggctcc 510  Q
    |||||||| |||||||||||| |||||||||||   || || |||| |||||  |||| |||||| |||||||||||||||||  |||||| |||||    
T  45658291 tacttaagccttaaaattttggatgaaaatgtagtctcgttttcacatgtgt--ttgccctttctccaatgcgtcgattcacattagtgttcgctcc 45658385  T

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Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 573 - 703
Target Start/End: Original strand, 6466121 - 6466243
Alignment:
Q  573 tggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgt 672  Q
    |||||||||||| |||||||| |||||||    ||||||||||| ||||||| ||||    ||||| |||||||   ||||||||||||| |||| ||||    
T  6466121 tggtggtggatcacagacacagagagtct----cttaatggagaaatgttaacgtgt----tgtgaattaaaatttgacattggatgcaagagtaaatgt 6466212  T
Q  673 tgagaaacatataagtgagatgactcatata 703  Q
    ||| |||||| | || ||||| | |||||||    
T  6466213 tgaaaaacatttgagagagattattcatata 6466243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 594 - 693
Target Start/End: Original strand, 14873420 - 14873517
Alignment:
Q  594 aagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagat 693  Q
    |||||||||| |||||  ||||||||||||| |||| || ||||| | ||| |  || |||||||||||  |||||| |||| |||||||||||||||||    
T  14873420 aagagtctcacacttatgggagagatgttaaagtgtcaattgtgactcaaagttccaaattggatgcaa--gtagatcttgaaaaacatataagtgagat 14873517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 650 - 729
Target Start/End: Complemental strand, 29975964 - 29975884
Alignment:
Q  650 acattggatgcaatagtagatgttgagaaacatataagtgagatgactcatatatataat-tcttaagattttgggtgaaa 729  Q
    ||||| ||||||||||||  || ||||||| |||||||  ||||||||||||||  |||| || |||||||||||||||||    
T  29975964 acattagatgcaatagtaagtggtgagaaaaatataagacagatgactcatatacctaatgtcataagattttgggtgaaa 29975884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 266 - 306
Target Start/End: Complemental strand, 36729685 - 36729645
Alignment:
Q  266 aactagtatggacacccgtgccaaacacgggttagaatttc 306  Q
    |||||||||||||||||||||||| ||||| ||||||||||    
T  36729685 aactagtatggacacccgtgccaagcacggattagaatttc 36729645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 607 - 686
Target Start/End: Original strand, 14868824 - 14868902
Alignment:
Q  607 ttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataa 686  Q
    |||||||||||||||||||||||| | ||| |||||||||  ||||||| | |||| ||||| || |||| |||||||||    
T  14868824 ttaatggagagatgttaatgtgttcagtgtaagttaaaatttcacattgtaagcaagagtagctg-tgagcaacatataa 14868902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 634 - 705
Target Start/End: Complemental strand, 19994486 - 19994416
Alignment:
Q  634 tgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagatgactcatatata 705  Q
    |||||||||||||  || |||| |||||| ||||||||| ||| || |||||||||||||||||| ||||||    
T  19994486 tgtgagttaaaatttcaaattgtatgcaagagtagatgt-gagcaatatataagtgagatgactcgtatata 19994416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 542 - 629
Target Start/End: Complemental strand, 19994590 - 19994503
Alignment:
Q  542 ttcaacatttttggggagcataagtggtttttggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgt 629  Q
    ||||||||| | | |||||  |||| ||||||| |||||||||   ||||| |||||||| | |||||||||||||||| ||||||||    
T  19994590 ttcaacattgtggaggagcggaagtagtttttgatggtggatcatggacacgaagagtctgacacttaatggagagatgctaatgtgt 19994503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 649 - 704
Target Start/End: Original strand, 24967988 - 24968043
Alignment:
Q  649 cacattggatgcaatagtagatgttgagaaacatataagtgagatgactcatatat 704  Q
    |||||||||||||||| ||||||||||  ||||||||||||| || || |||||||    
T  24967988 cacattggatgcaataatagatgttgaacaacatataagtgatataacccatatat 24968043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 618 - 696
Target Start/End: Complemental strand, 31963777 - 31963699
Alignment:
Q  618 atgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagatgac 696  Q
    |||||||||||| ||||| |||||||  | | ||||| |||| || ||||||| ||||| ||||||||||| |||||||    
T  31963777 atgttaatgtgtcaaatgcgagttaactttatacattagatggaagagtagattttgagcaacatataagtcagatgac 31963699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 615 - 696
Target Start/End: Complemental strand, 39403514 - 39403435
Alignment:
Q  615 gagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagatgac 696  Q
    ||||||||||||| |||  ||||||||||| |  || ||||||||||| |||||||| ||||||| ||||  ||||||||||    
T  39403514 gagatgttaatgttttatttgtgagttaaagtttcagattggatgcaagagtagatgatgagaaaaatat--gtgagatgac 39403435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 322 - 355
Target Start/End: Complemental strand, 10999594 - 10999561
Alignment:
Q  322 gagaatattgtgatgtatcaagtgtcacttaaat 355  Q
    ||||||||||||||||||||||||||| ||||||    
T  10999594 gagaatattgtgatgtatcaagtgtcagttaaat 10999561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 594 - 703
Target Start/End: Complemental strand, 13439454 - 13439345
Alignment:
Q  594 aagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagat 693  Q
    |||||||| ||||||| | |||| || | ||||||| |||||||| ||||| |  |||| |||||  |  || |||||||||| |||||||||||||  |    
T  13439454 aagagtctgatacttagtagagaaatatcaatgtgtcaaatgtgaattaaagtttcacactggataaaggagcagatgttgagcaacatataagtgatgt 13439355  T
Q  694 gactcatata 703  Q
    ||||||||||    
T  13439354 gactcatata 13439345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 654 - 695
Target Start/End: Original strand, 20443608 - 20443649
Alignment:
Q  654 tggatgcaatagtagatgttgagaaacatataagtgagatga 695  Q
    ||||||||| |||||||||||| ||| |||||||||||||||    
T  20443608 tggatgcaagagtagatgttgacaaaaatataagtgagatga 20443649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 622 - 695
Target Start/End: Original strand, 25546954 - 25547027
Alignment:
Q  622 taatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagatga 695  Q
    |||||||| |||||||||||||| |   ||||||||||||| |  | ||||||| |||||||||||||| ||||    
T  25546954 taatgtgtcaaatgtgagttaaagttctacattggatgcaagaacatatgttgaaaaacatataagtgatatga 25547027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 654 - 695
Target Start/End: Complemental strand, 31967373 - 31967332
Alignment:
Q  654 tggatgcaatagtagatgttgagaaacatataagtgagatga 695  Q
    ||||||||| |||| ||||| |||||||||||||||||||||    
T  31967373 tggatgcaaaagtaaatgttaagaaacatataagtgagatga 31967332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 266 - 744
Target Start/End: Complemental strand, 43387525 - 43387047
Alignment:
Q  266 aactagtatggacacccgtgccaaacacgggttagaatttcgtcattttcaatggagagaatattgtgatgtatcaagtgtcacttaaatatcaacattg 365  Q
    ||||||||||||||  |||||||| |||||||||||||||||| ||  |||||  |||||||||||||||| ||||||||||| |||||| ||||| |||    
T  43387525 aactagtatggacattcgtgccaagcacgggttagaatttcgttatcctcaatatagagaatattgtgatgcatcaagtgtcaattaaatttcaacgttg 43387426  T
Q  366 gataagatattggaggttgaagaacaaataagtgaaaaataaatcatgtacttaagtcttaaaattttgaatgaaaatgtaacatcattctcacttgtgt 465  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||| ||| ||||||||||    
T  43387425 gataaaatattggaggttgaagaacatataagtgaaaaataaatcatatacttaagtcttaaaattttggatgaagatgtaacattattttcacttgtgt 43387326  T
Q  466 gattgctctttctgcaatgcgtcgattcacacaagtgttggctccccataagttccaatggtgatatcatatccgcttcaacatttttggggagcataag 565  Q
    ||||||| ||||| || || ||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||| ||||||| |||    
T  43387325 gattgctttttctacattgtgtcaattcacacaagtgttggatccccataagtcccaatggtgatatcatatccgtttcaacattttttgggagcaaaag 43387226  T
Q  566 tggtttttggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatag 665  Q
    |||||  |||| |||||||||||||||  |||||||| |||||||  ||||||||||||||||| || ||||||||||||| |||||||| |||||||||    
T  43387225 tggttcgtggt-gtggatcgcagacacggagagtctcgtacttaacagagagatgttaatgtgtcaagtgtgagttaaaattacacattgaatgcaatag 43387127  T
Q  666 tagatgttgagaaacatataagtgagatgactcatatatataat-tcttaagattttgggtgaaattgtgatgtccatct 744  Q
    ||||||||||||||||||||||||| ||||||| ||||| |||| ||||||||||||||||||| |||||||||| ||||    
T  43387126 tagatgttgagaaacatataagtgaaatgactcgtatatctaatgtcttaagattttgggtgaagttgtgatgtcaatct 43387047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 568 - 709
Target Start/End: Complemental strand, 20306857 - 20306717
Alignment:
Q  568 gtttttggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagta 667  Q
    ||||| |||||||||   || |||||||||  || | ||||||||||||||||||||||||| || |||||||||||||   | |||| |||||||||||    
T  20306857 gttttgggtggtggactacaaacacaaagatcctgacacttaatggagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagta 20306758  T
Q  668 gatgttgagaaacatataagtgagatgactcatatatataat 709  Q
    |||  |||||||||| |||||||||||||||||||| |||||    
T  20306757 gat-atgagaaacatttaagtgagatgactcatatacataat 20306717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 564 - 701
Target Start/End: Complemental strand, 22636447 - 22636310
Alignment:
Q  564 agtggtttttggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaat 663  Q
    ||||||| ||||| ||||||| || ||| | ||||||| ||||||||||||||||||||||| | | || |||||||||||||   || ||| ||||||     
T  22636447 agtggttcttggttgtggatcccaaacatagagagtcttatacttaatggagagatgttaatttttcaagtgtgagttaaaatttgactttgaatgcaag 22636348  T
Q  664 agtagatgttgagaaacatataagtgagatgactcata 701  Q
    |||||||||||||  ||||||||| ||| |||||||||    
T  22636347 agtagatgttgagctacatataagggaggtgactcata 22636310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 572 - 709
Target Start/End: Original strand, 40946485 - 40946621
Alignment:
Q  572 ttggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatg 671  Q
    |||||||||||   || |||||||||  || | ||||||||||||||||||||||||| || |||||||||||||   | |||| ||||||||||||||     
T  40946485 ttggtggtggactacaaacacaaagatcctgacacttaatggagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtagat- 40946583  T
Q  672 ttgagaaacatataagtgagatgactcatatatataat 709  Q
     |||||||||| |||||||||||||||| ||| |||||    
T  40946584 atgagaaacatttaagtgagatgactcacatacataat 40946621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 572 - 709
Target Start/End: Complemental strand, 30001862 - 30001726
Alignment:
Q  572 ttggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatg 671  Q
    |||||||||||   || |||||||||  || | ||||||||||||||||||||||||| || ||| |||||||||   | |||| ||||||||||||||     
T  30001862 ttggtggtggactacaaacacaaagatcctgacacttaatggagagatgttaatgtgtcaagtgtaagttaaaattttatattgtatgcaatagtagat- 30001764  T
Q  672 ttgagaaacatataagtgagatgactcatatatataat 709  Q
     |||||||||| |||||||||||||||| ||| |||||    
T  30001763 atgagaaacatttaagtgagatgactcacatacataat 30001726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 605 - 709
Target Start/End: Original strand, 1992421 - 1992524
Alignment:
Q  605 acttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagatgactcatatat 704  Q
    ||||||||||||||||||||||||| || |||||||||||||   | |||| |||||||||||| |  |||||||||| |||||||||||||||| |||     
T  1992421 acttaatggagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtag-ttatgagaaacatttaagtgagatgactcacatac 1992519  T
Q  705 ataat 709  Q
    |||||    
T  1992520 ataat 1992524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 619 - 709
Target Start/End: Complemental strand, 26531638 - 26531550
Alignment:
Q  619 tgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagatgactcatatatataat 709  Q
    ||||||| ||||| |||||||||||| |  |||||| ||||||||||||||||   ||||| |||||||||||||||||||||||| ||||    
T  26531638 tgttaatatgttagatgtgagttaaagtttcacattagatgcaatagtagatg--cagaaaaatataagtgagatgactcatatatctaat 26531550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 566 - 689
Target Start/End: Complemental strand, 17006613 - 17006492
Alignment:
Q  566 tggtttttggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatag 665  Q
    |||||| ||||||| |||| || |  || |||||||| ||||| | ||||| |||||||||||| || || |||||||| |  ||||||||||| || ||    
T  17006613 tggtttatggtggtagatctcatatgcagagagtctcgtacttgagggagaaatgttaatgtgtcaagtgcgagttaaagt--cacattggatgtaagag 17006516  T
Q  666 tagatgttgagaaacatataagtg 689  Q
    ||||||||||| ||||||||||||    
T  17006515 tagatgttgagtaacatataagtg 17006492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 566 - 689
Target Start/End: Original strand, 34159478 - 34159599
Alignment:
Q  566 tggtttttggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatag 665  Q
    |||||| ||||||| |||| || |  || |||||||| ||||| | ||||| |||||||||||| || || |||||||| |  ||||||||||| || ||    
T  34159478 tggtttatggtggtagatctcatatgcagagagtctcgtacttgagggagaaatgttaatgtgtcaagtgcgagttaaagt--cacattggatgtaagag 34159575  T
Q  666 tagatgttgagaaacatataagtg 689  Q
    ||||||||||| ||||||||||||    
T  34159576 tagatgttgagtaacatataagtg 34159599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 283 - 484
Target Start/End: Complemental strand, 22636704 - 22636505
Alignment:
Q  283 gtgccaaacacgggttagaatttcgtcat--tttcaatggagagaatattgtgatgtatcaagtgtcacttaaatatcaacattggataagatattggag 380  Q
    ||||||||||| ||||||||||| |||||  ||||||  |||||||||   |||||||| |||||||| |||||   | ||||||||||| ||| ||||     
T  22636704 gtgccaaacacaggttagaattttgtcatactttcaa--gagagaatagaatgatgtatgaagtgtcagttaaagcccgacattggataacatagtggac 22636607  T
Q  381 gttgaagaacaaataagtgaaaaataaatcatgtacttaagtcttaaaattttgaatgaaaatgtaacatcattctcacttgtgtgattgctctttctgc 480  Q
     || || ||||||||||||||||     |||| |||||||  |||||||||||| || || ||||   ||||||| ||||| | || |||||||||||||    
T  22636606 tttaaacaacaaataagtgaaaatgc--tcatatacttaatccttaaaattttggataaagatgtggtatcattcccacttctatggttgctctttctgc 22636509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 595 - 709
Target Start/End: Original strand, 47783135 - 47783249
Alignment:
Q  595 agagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagatg 694  Q
    |||||||| || |||| | | |||||||||||||| || ||||||||||| |  |||||||| ||||| ||||  |||| |  ||||||||||||| |||    
T  47783135 agagtctcgtatttaaggaatagatgttaatgtgtcaagtgtgagttaaagtttcacattggctgcaagagtaattgtttaacaacatataagtgatatg 47783234  T
Q  695 actcatatatataat 709  Q
    ||||||||| |||||    
T  47783235 actcatatacataat 47783249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 589 - 695
Target Start/End: Complemental strand, 31089647 - 31089541
Alignment:
Q  589 acacaaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagt 688  Q
    ||||||| | ||||| |||||| ||||| |||||||||||| | |||| ||||||| |   |||||||||| || |||| || ||||| ||||||||||     
T  31089647 acacaaaaaatctcacacttaagggagatatgttaatgtgtcatatgtaagttaaatttctacattggatgaaagagtatattttgagcaacatataagc 31089548  T
Q  689 gagatga 695  Q
    |||||||    
T  31089547 gagatga 31089541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 595 - 704
Target Start/End: Complemental strand, 7844716 - 7844607
Alignment:
Q  595 agagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagatg 694  Q
    |||||||||||||| |  || ||| ||||| |||| || ||||| ||||| |   ||||||||||||||| ||||||||||  ||||||||||||| ||     
T  7844716 agagtctcatacttgagagaaagaggttaacgtgtcaattgtgatttaaagttctacattggatgcaataatagatgttgaacaacatataagtgatata 7844617  T
Q  695 actcatatat 704  Q
    || |||||||    
T  7844616 acccatatat 7844607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 574 - 671
Target Start/End: Complemental strand, 8313508 - 8313411
Alignment:
Q  574 ggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatg 671  Q
    ||||||||||| |  ||||  ||||||| | ||||||||||||||||||||||| |||| ||  |||||||||   |||||| |||||| ||||||||    
T  8313508 ggtggtggatcacgaacacggagagtctgacacttaatggagagatgttaatgtattaagtgaaagttaaaattttacattgtatgcaagagtagatg 8313411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 607 - 668
Target Start/End: Original strand, 16851963 - 16852024
Alignment:
Q  607 ttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtag 668  Q
    |||||||||||||||||||||||| | ||| |||||||||  ||||||| |||||| |||||    
T  16851963 ttaatggagagatgttaatgtgttcagtgtaagttaaaatttcacattgtatgcaagagtag 16852024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 656 - 705
Target Start/End: Complemental strand, 43385157 - 43385108
Alignment:
Q  656 gatgcaatagtagatgttgagaaacatataagtgagatgactcatatata 705  Q
    |||| |||||||||||||||  |||||||| |||||||||||||||||||    
T  43385157 gatggaatagtagatgttgaataacatatatgtgagatgactcatatata 43385108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 594 - 727
Target Start/End: Original strand, 16853598 - 16853730
Alignment:
Q  594 aagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagat 693  Q
    |||||||||| |||||  ||||||||||||| |||| || ||||| | ||| |  || ||||||||||  |||| || |||| |||||||||||||||||    
T  16853598 aagagtctcacacttatgggagagatgttaaagtgtcaattgtgactcaaagtttcaaattggatgca--agtaaatcttgaaaaacatataagtgagat 16853695  T
Q  694 gactcatatatataattc-ttaagattttgggtga 727  Q
    ||   ||||| ||||| | ||||| ||||||||||    
T  16853696 gatcaatatacataatgctttaaggttttgggtga 16853730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 649 - 704
Target Start/End: Complemental strand, 19065797 - 19065742
Alignment:
Q  649 cacattggatgcaatagtagatgttgagaaacatataagtgagatgactcatatat 704  Q
    ||||||||||||||||||| |||||||  || |||||||||| ||||| |||||||    
T  19065797 cacattggatgcaatagtaaatgttgaacaatatataagtgatatgacccatatat 19065742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 649 - 704
Target Start/End: Complemental strand, 19113687 - 19113632
Alignment:
Q  649 cacattggatgcaatagtagatgttgagaaacatataagtgagatgactcatatat 704  Q
    ||||||||||||||||||| |||||||  || |||||||||| ||||| |||||||    
T  19113687 cacattggatgcaatagtaaatgttgaacaatatataagtgatatgacccatatat 19113632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 649 - 700
Target Start/End: Complemental strand, 21469867 - 21469816
Alignment:
Q  649 cacattggatgcaatagtagatgttgagaaacatataagtgagatgactcat 700  Q
    ||||||||||||||||||| |||||||  || |||||||||| |||||||||    
T  21469867 cacattggatgcaatagtaaatgttgaacaatatataagtgatatgactcat 21469816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 40946249 - 40946292
Alignment:
Q  266 aactagtatggacacccgtgccaaacacgggttagaatttcgtc 309  Q
    |||||| ||||||||||||||||| ||||||||||||| |||||    
T  40946249 aactagcatggacacccgtgccaagcacgggttagaatgtcgtc 40946292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 574 - 644
Target Start/End: Complemental strand, 3838251 - 3838181
Alignment:
Q  574 ggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaa 644  Q
    |||||| |||| |||| |||||||||||||||||| | |  ||||||||||||||| || ||| |||||||    
T  3838251 ggtggtagatcacagatacaaagagtctcatacttgaggacgagatgttaatgtgtcaagtgtaagttaaa 3838181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 269 - 342
Target Start/End: Complemental strand, 3838497 - 3838424
Alignment:
Q  269 tagtatggacacccgtgccaaacacgggttagaatttcgtcattttcaatggagagaatattgtgatgtatcaa 342  Q
    ||||||||| ||||||||||| |||||| ||||||||| |||| ||  | | ||| ||||||||||| ||||||    
T  3838497 tagtatggatacccgtgccaagcacgggctagaatttcttcatattagaggaagataatattgtgatatatcaa 3838424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 649 - 695
Target Start/End: Complemental strand, 31088834 - 31088786
Alignment:
Q  649 cacattggatgcaatagtagatgttgagaaaca--tataagtgagatga 695  Q
    |||||||||||||| ||||| ||||||||||||  ||||||||||||||    
T  31088834 cacattggatgcaagagtaggtgttgagaaacatatataagtgagatga 31088786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 654 - 695
Target Start/End: Original strand, 49880330 - 49880371
Alignment:
Q  654 tggatgcaatagtagatgttgagaaacatataagtgagatga 695  Q
    ||||||||| |||| ||||| |||||||||||||||||||||    
T  49880330 tggatgcaaaagtaaatgttaagaaacatataagtgagatga 49880371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 269 - 744
Target Start/End: Complemental strand, 33671 - 33194
Alignment:
Q  269 tagtatggacacccgtgccaaacacgggttagaatttcgtcattttcaatggagagaatattgtgatgtatcaagtgtcacttaaatatcaacattggat 368  Q
    |||||| |||| ||||| |||||||  |||||||||||||||  |||||| || |||||||||| ||||||||||||||| |||||| |||| |||||||    
T  33671 tagtatagacatccgtgacaaacacatgttagaatttcgtcaccttcaattgaaagaatattgtaatgtatcaagtgtcagttaaatctcaatattggat 33572  T
Q  369 aagatattggaggttgaagaacaaataagtgaaaaataaa-tcatgtacttaagtcttaaaattttgaatgaaaatgtaacatcattctcacttgtgtga 467  Q
    || | ||||||||||||||||||||||||||||||||| | | ||  | ||||||||| || ||||| ||||| ||||||||||||||||||||||||||    
T  33571 aaaacattggaggttgaagaacaaataagtgaaaaatagacttattcagttaagtcttgaagttttggatgaagatgtaacatcattctcacttgtgtga 33472  T
Q  468 ttgctctttctgcaatgcgtcg--attcacacaagtgttggctccccataagttccaatggtgatatcatatccgcttcaacatttttggggagcataag 565  Q
    ||||||||||||||||| |||   |||||||||||||||||||||||||||||  ||||| |||||||||| ||||||||||||||||||| |||  |||    
T  33471 ttgctctttctgcaatgtgtcatcattcacacaagtgttggctccccataagtctcaatgttgatatcatacccgcttcaacatttttgggaagcggaag 33372  T
Q  566 tggtttttggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatag 665  Q
    |||||  ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  33371 tggttcgtggtggtggatcgcagacacagagagtctcatacttaatgaagagatgttaatgtgtcaaatgtgagttaaaataacacattgaatgcaatag 33272  T
Q  666 tagatgttgagaaacatataagtgagatgactcatatatataattcttaagattttgggtgaaattgtgatgtccatct 744  Q
    ||||||||||  ||||||||||||||||||||||||| || |  ||||||||||||||||||| |||||||||| ||||    
T  33271 tagatgttgaacaacatataagtgagatgactcatatcta-atgtcttaagattttgggtgaagttgtgatgtcaatct 33194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 41)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 267 - 735
Target Start/End: Complemental strand, 42797711 - 42797242
Alignment:
Q  267 actagtatggacacccgtgccaaacacgggttagaatttcgtcattttcaatggagagaatattgtgatgtatcaagtgtcacttaaatatcaacattgg 366  Q
    ||||| |||||||||||||||||  ||||| || |||||||||||  | || |||||||||||||| | |||| || |||   |||||| | || |||||    
T  42797711 actagcatggacacccgtgccaagtacgggctaaaatttcgtcatccttaagggagagaatattgtaaagtattaaatgtatgttaaatcttaatattgg 42797612  T
Q  367 ataagatattggaggttgaagaacaaataagtgaaaaataaatcatgtacttaagtcttaaaattttgaatgaaaatgtaacatcattctcacttgtgtg 466  Q
    |||| ||||||||||||| |||  |||||||||||||  || || | |||||||| ||| |||||||| ||||| |||| |||||||| ||||| |||||    
T  42797611 ataaaatattggaggttggagagtaaataagtgaaaataaactcttatacttaagactttaaattttggatgaagatgtgacatcattatcactcgtgtg 42797512  T
Q  467 attgctctttctgcaatgcgtcgattcacacaagtgttggctccccataagttccaatggtgatatcatatccgcttcaacatttttggggagcataagt 566  Q
    |||||||||||||||||| ||||||||||||||||||| ||||| | |||||  |||||||||||||||||| |||||||||||||||||||||  ||||    
T  42797511 attgctctttctgcaatgtgtcgattcacacaagtgtttgctcctcgtaagtctcaatggtgatatcatatctgcttcaacatttttggggagcggaagt 42797412  T
Q  567 ggtttttggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagt 666  Q
    ||| | ||||||||||| ||||| ||| |||||||||| |||||| || |||||||||||||| || |||||||||||||||||||||| ||||||||||    
T  42797411 ggtctgtggtggtggatagcagatacagagagtctcatgcttaatagaaagatgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatagt 42797312  T
Q  667 agatgttgagaaacatataagtgagatgactcatatatataat-tcttaagattttgggtgaaattgtga 735  Q
    | |||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||| ||||||    
T  42797311 atatgttgagaaacatataagtgagatgactcatgtatctaatgtcttaagattttgggtgaagttgtga 42797242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 266 - 735
Target Start/End: Complemental strand, 23142224 - 23141752
Alignment:
Q  266 aactagtatggacacccgtgccaaacacgggttagaatttcgtcattttcaatggagagaatattgtgatgtatcaagtgtcacttaaatatcaacattg 365  Q
    |||||| ||||||||||||||||| |||||| ||||||||||||||  | || |||||||||||| | | |||| || |||   |||||| |||| ||||    
T  23142224 aactagcatggacacccgtgccaagcacgggctagaatttcgtcatccttaagggagagaatattttaaagtattaaatgtatgttaaatctcaatattg 23142125  T
Q  366 gataagatattggaggttgaagaacaaataagtgaaaaataaa-tcatgtacttaagtcttaaaattttgaatgaaaatgtaacatcattctcacttgtg 464  Q
    ||||| |||||||||||||||||  |||||||||||||  ||| |||  |||||||| ||| |||||||| ||||| ||||||||||||| ||||| |||    
T  23142124 gataaaatattggaggttgaagagtaaataagtgaaaataaaactcaaatacttaagactttaaattttggatgaagatgtaacatcattatcactcgtg 23142025  T
Q  465 tgattgctctttctgcaatgcgtcgattcacacaagtgttggctcccc-ataagttccaatggtgatatcatatccgcttcaacatttttggggagcata 563  Q
    |||||||||||| ||||||| ||||||||||||||| ||||||||||| ||||||  |||||||||||||||||| ||||||||||||| |||||||  |    
T  23142024 tgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtctcaatggtgatatcatatctgcttcaacattttcggggagcgga 23141925  T
Q  564 agtggtttttggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaat 663  Q
    ||||||   ||||||||||| ||||| ||| |||||||||| |||||| |||||||||||| |||| || | |||||||||||||||||||| |||||||    
T  23141924 agtggtccgtggtggtggatagcagatacagagagtctcatgcttaatagagagatgttaacgtgtcaagtatgagttaaaataacacattgaatgcaat 23141825  T
Q  664 agtagatgttgagaaacatataagtgagatgactcatatatataat-tcttaagattttgggtgaaattgtga 735  Q
    ||||||||||||||||||||||| ||||||||||||| ||| |||| ||||||||||||||||||| ||||||    
T  23141824 agtagatgttgagaaacatataaatgagatgactcatgtatctaatgtcttaagattttgggtgaagttgtga 23141752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 267 - 735
Target Start/End: Original strand, 13756203 - 13756666
Alignment:
Q  267 actagtatggacacccgtgccaaacacgggttagaatttcgtcattttcaatggagagaatattgtgatgtatcaagtgtcacttaaatatcaacattgg 366  Q
    ||||| ||||||||||||||||| |||||| || ||||||||||| |  || |||||||||||||| | |||| || | |   |||||| |||| |||||    
T  13756203 actagcatggacacccgtgccaagcacgggctaaaatttcgtcatctctaagggagagaatattgtaaagtattaaatatatgttaaatctcaatattgg 13756302  T
Q  367 ataagatattggaggttgaagaacaaataagtgaaaaataaatcatgtacttaagtcttaaaattttgaatgaaaatgtaacatcattctcacttgtgtg 466  Q
    |||| |||||||||||||||||  |||||||||||||  || |||| ||||| |       ||||||| ||||| ||||||||||||| |||||||||||    
T  13756303 ataaaatattggaggttgaagagtaaataagtgaaaataaactcatatacttta-------aattttggatgaagatgtaacatcattatcacttgtgtg 13756395  T
Q  467 attgctctttctgcaatgcgtcgattcacacaagtgttggctccc-cataagttccaatggtgatatcatatccgcttcaacatttttggggagcataag 565  Q
    |||||||||||||||||| ||||||||||||||| ||||||| || ||||||| ||||||||||||||||||| |||||||||||||||||||||  |||    
T  13756396 attgctctttctgcaatgtgtcgattcacacaagcgttggcttccacataagtcccaatggtgatatcatatctgcttcaacatttttggggagcggaag 13756495  T
Q  566 tggtttttggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatag 665  Q
    ||||   ||||||||||| | ||| |||||||||||||| ||||||  ||| |||||||||||| || |||||||||||||||||||||| |||||||||    
T  13756496 tggtccgtggtggtggatagtagatacaaagagtctcatgcttaatatagatatgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatag 13756595  T
Q  666 tagatgttgagaaacatataagtgagatgactcatatatataat-tcttaagattttgggtgaaattgtga 735  Q
    ||||||||||||||||| ||||||| ||||||||| ||| |||| ||||||||||||||||||| ||||||    
T  13756596 tagatgttgagaaacatttaagtgaaatgactcatgtatctaatgtcttaagattttgggtgaagttgtga 13756666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 361 - 701
Target Start/End: Complemental strand, 21589166 - 21588824
Alignment:
Q  361 cattggataagatattggaggttgaagaacaaataagtgaaaaataaa-tcatgtacttaagtcttaaaattttgaatgaaaatgtaacatcattctcac 459  Q
    |||||||||| ||||||||||| |||||||||||||||| |||| ||| ||||  ||| ||| |||||||||||||| ||| |||  |||||||||||||    
T  21589166 cattggataaaatattggaggtcgaagaacaaataagtggaaaaaaaactcat--actaaagccttaaaattttgaaagaagatgcgacatcattctcac 21589069  T
Q  460 ttgtgtgattgctctttctgcaatgcgtcgattcacacaagtgttggctcccca-taagttccaatggtgatatcatatccgcttcaacatttttgggga 558  Q
     |||||| ||| | ||||||||||| ||||| |||||||||||||| ||||||  |||||||||||||||||||||||| |||||||||| || ||||||    
T  21589068 ctgtgtggttgttttttctgcaatgtgtcgaatcacacaagtgttgtctcccccgtaagttccaatggtgatatcatatacgcttcaacaattatgggga 21588969  T
Q  559 gcataagtggtttttggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggat 658  Q
    ||  ||||| ||  |||||||||||||  ||||| |||||| || || ||||| |||||||| |||||||| ||  ||| ||||||||||||||||| ||    
T  21588968 gcgaaagtgcttcgtggtggtggatcgtggacacgaagagtatcgtatttaattgagagatggtaatgtgtcaagggtgggttaaaataacacattgaat 21588869  T
Q  659 g-ca-atagtagatgttgagaaacatataagtgagatgactcata 701  Q
    | || ||| ||||| ||||  ||||||| ||||||||||||||||    
T  21588868 gtcatataatagatattgaataacatatcagtgagatgactcata 21588824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 266 - 474
Target Start/End: Complemental strand, 10901754 - 10901547
Alignment:
Q  266 aactagtatggacacccgtgccaaacacgggttagaatttcgtcattttcaatggagagaatattgtgatgtatcaagtg-tcacttaaatatcaacatt 364  Q
    ||||||||| |||||| ||||||| |||||| ||||||||||||||  ||||||||||||||||||| |||||||||||| ||| |||||| ||||||||    
T  10901754 aactagtatagacacctgtgccaagcacgggctagaatttcgtcatcctcaatggagagaatattgtaatgtatcaagtgttcagttaaatctcaacatt 10901655  T
Q  365 ggataagatattggaggttgaagaacaaataagtgaaaaataaatcatgtacttaagtcttaaaattttgaatgaaaatgtaacatcattctcacttgtg 464  Q
    |||||| |||||||||||||||||||| |||| |||||||||||| || || |||||||||  ||||||| ||||| ||||||||||||| |||||||||    
T  10901654 ggataaaatattggaggttgaagaacatataaatgaaaaataaattatatatttaagtctt--aattttggatgaagatgtaacatcattttcacttgtg 10901557  T
Q  465 tgattgctct 474  Q
     |||||||||    
T  10901556 cgattgctct 10901547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 595 - 744
Target Start/End: Complemental strand, 10901540 - 10901390
Alignment:
Q  595 agagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagatg 694  Q
    |||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||    
T  10901540 agagtctcgtacttaatggagagatgttaatgtatcaaatgtgagttaaaataacacattgaatgcaatagtagatgttgagtaacatacaagtgagatg 10901441  T
Q  695 actcatatatataat-tcttaagattttgggtgaaattgtgatgtccatct 744  Q
    |||| ||||| |||| | ||||||||||||||||| |||||||||| ||||    
T  10901440 actcgtatatctaatgtgttaagattttgggtgaagttgtgatgtcaatct 10901390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 266 - 354
Target Start/End: Complemental strand, 21589357 - 21589269
Alignment:
Q  266 aactagtatggacacccgtgccaaacacgggttagaatttcgtcattttcaatggagagaatattgtgatgtatcaagtgtcacttaaa 354  Q
    ||||||| |||||||||||||||| |||||| |||||||||| ||| |  ||||||||||||||||||| ||||||||||||| |||||    
T  21589357 aactagtttggacacccgtgccaagcacgggctagaatttcggcatatctaatggagagaatattgtgacgtatcaagtgtcagttaaa 21589269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 263 - 355
Target Start/End: Complemental strand, 40114541 - 40114449
Alignment:
Q  263 aataactagtatggacacccgtgccaaacacgggttagaatttcgtcattttcaatggagagaatattgtgatgtatcaagtgtcacttaaat 355  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||  |  | ||||| |||||| ||||||||  ||||||| ||||||    
T  40114541 aataactagtatggacacccgtgccaagcacgggttagaatttcgtcatagttgagggagacaatattatgatgtatttagtgtcagttaaat 40114449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 267 - 355
Target Start/End: Complemental strand, 41529123 - 41529035
Alignment:
Q  267 actagtatggacacccgtgccaaacacgggttagaatttcgtcattttcaatggagagaatattgtgatgtatcaagtgtcacttaaat 355  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||  || | ||||| |||||| ||||||||| ||||||| ||||||    
T  41529123 actagtatggacacccgtgccaagcacgggctagaatttcgtcatagtcgagggagacaatattatgatgtatctagtgtcagttaaat 41529035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 595 - 744
Target Start/End: Original strand, 30254510 - 30254663
Alignment:
Q  595 agagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatat-aagtgag-- 691  Q
    |||||||||||||||| ||| |||||||||||||| ||||||||||||||||   ||| | |||||||  ||| |||||||  ||||||| |||||||      
T  30254510 agagtctcatacttaacggaaagatgttaatgtgtcaaatgtgagttaaaattcgacaatagatgcaaacgtatatgttgaacaacatataaagtgagac 30254609  T
Q  692 atgactcatatatataat-tcttaagattttgggtgaaattgtgatgtccatct 744  Q
    | ||||||||||  |||| ||  |||| ||||||||||  ||||||||||||||    
T  30254610 acgactcatatacctaatgtcaaaagactttgggtgaagatgtgatgtccatct 30254663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 566 - 689
Target Start/End: Complemental strand, 16313369 - 16313248
Alignment:
Q  566 tggtttttggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatag 665  Q
    |||||| ||||||| |||| || |  || |||||||| ||||| | ||||| |||||||||||| || || |||||||| |  ||||||||||| || ||    
T  16313369 tggtttatggtggtagatctcatatgcagagagtctcgtacttgagggagaaatgttaatgtgtcaagtgcgagttaaagt--cacattggatgtaagag 16313272  T
Q  666 tagatgttgagaaacatataagtg 689  Q
    ||||||||||| ||||||||||||    
T  16313271 tagatgttgagtaacatataagtg 16313248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 566 - 689
Target Start/End: Original strand, 34800782 - 34800903
Alignment:
Q  566 tggtttttggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatag 665  Q
    |||||| ||||||| |||| || |  || |||||||| ||||| | ||||| |||||||||||| || || |||||||| |  ||||||||||| || ||    
T  34800782 tggtttatggtggtagatctcatatgcagagagtctcgtacttgagggagaaatgttaatgtgtcaagtgcgagttaaagt--cacattggatgtaagag 34800879  T
Q  666 tagatgttgagaaacatataagtg 689  Q
    ||||||||||| ||||||||||||    
T  34800880 tagatgttgagtaacatataagtg 34800903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 379 - 517
Target Start/End: Original strand, 24481718 - 24481857
Alignment:
Q  379 aggttgaagaacaaataagtg-aaaaataaatcatgtacttaagtcttaaaattttgaatgaaaatgtaacatcattctcacttgtgtgattgctctttc 477  Q
    |||||||| |||||||||||| ||||| ||| |    ||||||| |||||||||||||| ||| |||||  |||||||||||| ||||||||| |||||     
T  24481718 aggttgaacaacaaataagtggaaaaaaaaaactcacacttaagccttaaaattttgaaagaagatgtagtatcattctcactggtgtgattgttctttt 24481817  T
Q  478 tgcaatgcgtcgattcacacaagtgttggctccccataag 517  Q
    | ||| | || |||  |||| ||||||||| |||||||||    
T  24481818 tccaacgtgttgatctacaccagtgttggcaccccataag 24481857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 321 - 473
Target Start/End: Original strand, 757816 - 757964
Alignment:
Q  321 agagaatattgtgatgtatcaagtgtcacttaaatatcaacattggataagatattggaggttgaagaacaaataagtgaaaaataaatcatgtacttaa 420  Q
    ||||||||| ||||| |||||||||||| |||||   ||||||||||| | | | ||||||||||| ||||| |||||||||   || | || |||||||    
T  757816 agagaatatcgtgatttatcaagtgtcaattaaaacgcaacattggattaaaga-tggaggttgaacaacaattaagtgaaa---aacttatatacttaa 757911  T
Q  421 gtcttaaaattttgaatgaaaatgtaacatcattctcacttgtgtgattgctc 473  Q
       |||||| |||| |||||||| | | ||||||||||||| |||||||||||    
T  757912 actttaaaaatttggatgaaaatatgatatcattctcacttatgtgattgctc 757964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 591 - 748
Target Start/End: Original strand, 13758877 - 13759030
Alignment:
Q  591 acaaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtga 690  Q
    ||||||||||||||| ||||  ||||||||||||||| | || ||||||||||  ||     |||||||||| ||||| |||| |  ||||||| |||||    
T  13758877 acaaagagtctcatagttaaaagagagatgttaatgtatcaagtgtgagttaaccta-----ttggatgcaagagtagttgttaaacaacatattagtga 13758971  T
Q  691 gatgactcatatatataat-tcttaagattttgggtgaaattgtgatgtccatctcatt 748  Q
    |||||| | ||||  |||| ||||||| |||||||| ||| |||| |||| ||||||||    
T  13758972 gatgacccgtatacctaatgtcttaaggttttgggtcaaaatgtggtgtcaatctcatt 13759030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 618 - 696
Target Start/End: Original strand, 17888052 - 17888130
Alignment:
Q  618 atgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagatgac 696  Q
    |||||||||||| ||||||||||||| || | ||| |||||| || ||||||| ||||  |||||||||||||||||||    
T  17888052 atgttaatgtgtcaaatgtgagttaacattatacactggatggaagagtagattttgaacaacatataagtgagatgac 17888130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 266 - 355
Target Start/End: Complemental strand, 16221981 - 16221892
Alignment:
Q  266 aactagtatggacacccgtgccaaacacgggttagaatttcgtcattttcaatggagagaatattgtgatgtatcaagtgtcacttaaat 355  Q
    ||||||||||||||| ||||| || |||||| ||||||||||||||  |  | ||||| |||||| ||||||||| ||||||| ||||||    
T  16221981 aactagtatggacactcgtgctaagcacgggctagaatttcgtcatagttgagggagacaatattatgatgtatctagtgtcagttaaat 16221892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 595 - 704
Target Start/End: Original strand, 40885744 - 40885853
Alignment:
Q  595 agagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagatg 694  Q
    |||||||||||||| |  || ||| |||||  ||| || ||||| |||||||  |||||||||||||||| || |||||||  ||||||||||||| ||     
T  40885744 agagtctcatacttgagagaaagaggttaacatgtcaagtgtgatttaaaatttcacattggatgcaataataaatgttgaacaacatataagtgatata 40885843  T
Q  695 actcatatat 704  Q
    ||||||||||    
T  40885844 actcatatat 40885853  T

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Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 566 - 689
Target Start/End: Complemental strand, 37251285 - 37251164
Alignment:
Q  566 tggtttttggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatag 665  Q
    |||||| ||||||| |||| || |  || |||||||| ||||| | ||||| |||||||||||| || || |||||||| |  ||||||||||| || ||    
T  37251285 tggtttatggtggtagatctcatatgcagagagtctcgtacttgagggagaaatgttaatgtgtcaagtgcgagttaaagt--cacattggatgtaagag 37251188  T
Q  666 tagatgttgagaaacatataagtg 689  Q
    ||||| ||||| ||||||||||||    
T  37251187 tagatattgagtaacatataagtg 37251164  T

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Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 649 - 704
Target Start/End: Original strand, 357546 - 357601
Alignment:
Q  649 cacattggatgcaatagtagatgttgagaaacatataagtgagatgactcatatat 704  Q
    ||||||||||||||||||| |||||||  || |||||||||| |||||||||||||    
T  357546 cacattggatgcaatagtaaatgttgaacaatatataagtgatatgactcatatat 357601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 267 - 330
Target Start/End: Complemental strand, 18432568 - 18432505
Alignment:
Q  267 actagtatggacacccgtgccaaacacgggttagaatttcgtcattttcaatggagagaatatt 330  Q
    ||||||||||||||||||||||| |||||| |||||||| |||||  | |||||||| ||||||    
T  18432568 actagtatggacacccgtgccaagcacgggctagaattttgtcatacttaatggagataatatt 18432505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 649 - 704
Target Start/End: Original strand, 23683161 - 23683216
Alignment:
Q  649 cacattggatgcaatagtagatgttgagaaacatataagtgagatgactcatatat 704  Q
    ||||||||||||||||||| |||||||  || |||||||||| |||||||||||||    
T  23683161 cacattggatgcaatagtaaatgttgaacaatatataagtgatatgactcatatat 23683216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 542 - 644
Target Start/End: Complemental strand, 18431776 - 18431674
Alignment:
Q  542 ttcaacatttttggggagcataagtggtttttggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagtt 641  Q
    ||||||||||| ||||||    ||||||| |||||||| |||| | | |||  ||||||| | |||||||||||||||| |||||||| |||| ||||||    
T  18431776 ttcaacattttgggggagtgagagtggttcttggtggtcgatcacgggcacgtagagtctaacacttaatggagagatgataatgtgtcaaatatgagtt 18431677  T
Q  642 aaa 644  Q
    |||    
T  18431676 aaa 18431674  T

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Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 678 - 744
Target Start/End: Original strand, 38292408 - 38292474
Alignment:
Q  678 aacatataagtgagatgactcatatatataattcttaagattttgggtgaaattgtgatgtccatct 744  Q
    ||||||||| |||||||||||||||||||  | || |||||||||| ||||| ||||||||| ||||    
T  38292408 aacatataaatgagatgactcatatatatgttcctaaagattttggatgaaaatgtgatgtcaatct 38292474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 389 - 494
Target Start/End: Original strand, 45527083 - 45527186
Alignment:
Q  389 acaaataagtgaaaaataaatcatgtacttaagtcttaaaattttgaatgaaaatgtaacatcattctcacttgtgtgattgctctttctgcaatgcgtc 488  Q
    |||||||||||||||||   | || ||||||||  |||||||||||| |||| ||||   |||||||| ||||||||| ||||||||||| |||||  ||    
T  45527083 acaaataagtgaaaaatt--ttatatacttaagctttaaaattttgattgaatatgtcgtatcattcttacttgtgtggttgctctttctccaatgtatc 45527180  T
Q  489 gattca 494  Q
    ||||||    
T  45527181 gattca 45527186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 652 - 709
Target Start/End: Original strand, 12158035 - 12158092
Alignment:
Q  652 attggatgcaatagtagatgttgagaaacatataagtgagatgactcatatatataat 709  Q
    ||||||||||| | |||||| ||||||| |||||||||||| |||||||||| |||||    
T  12158035 attggatgcaagattagatggtgagaaaaatataagtgagaagactcatatacataat 12158092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 614 - 703
Target Start/End: Complemental strand, 41527115 - 41527026
Alignment:
Q  614 agagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagatgactcatata 703  Q
    |||||| ||||||||| || |||||||||||||   | | |||||  || ||||||| ||||  ||||||||||||||||||||||||||    
T  41527115 agagatattaatgtgtcaagtgtgagttaaaattctatagtggatagaagagtagattttgaataacatataagtgagatgactcatata 41527026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 595 - 704
Target Start/End: Original strand, 45247768 - 45247877
Alignment:
Q  595 agagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagatg 694  Q
    ||||||||| |||||| |||||||| ||||| ||| || ||||||||||| |   || ||| |||||| ||||  ||||||  || |||||| |||||||    
T  45247768 agagtctcacacttaagggagagattttaatatgtcaagtgtgagttaaagttctacgttgaatgcaaaagtatgtgttgaacaaaatataaatgagatg 45247867  T
Q  695 actcatatat 704  Q
    ||||||||||    
T  45247868 actcatatat 45247877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 595 - 695
Target Start/End: Original strand, 14376134 - 14376234
Alignment:
Q  595 agagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagatg 694  Q
    |||||||||||||||||| ||| ||||||||||  ||| || || ||||| |  |||||| || ||||||||| ||||| ||||| || || ||||||||    
T  14376134 agagtctcatacttaatgaagatatgttaatgtactaattgcgacttaaagttccacattagaagcaatagtaaatgttaagaaatatttacgtgagatg 14376233  T
Q  695 a 695  Q
    |    
T  14376234 a 14376234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 661 - 704
Target Start/End: Original strand, 13758078 - 13758121
Alignment:
Q  661 aatagtagatgttgagaaacatataagtgagatgactcatatat 704  Q
    |||||||||||||||  |||||||| ||||||||||||||||||    
T  13758078 aatagtagatgttgaataacatatacgtgagatgactcatatat 13758121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 619 - 682
Target Start/End: Complemental strand, 18953425 - 18953362
Alignment:
Q  619 tgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacat 682  Q
    ||||||||||| || ||||| |||||||   ||||||||||||| |||||||||||| ||||||    
T  18953425 tgttaatgtgtcaactgtgaattaaaatttgacattggatgcaagagtagatgttgaaaaacat 18953362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 613 - 748
Target Start/End: Complemental strand, 43215930 - 43215796
Alignment:
Q  613 gagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagatgactcatatatataattct 712  Q
    |||||||||||||||||| ||| |||||||||||   ||| | |||| || |||||||| |||  ||||||||||| | |||||||||||| ||   |||    
T  43215930 gagagatgttaatgtgtttaatatgagttaaaattttacaatagatgaaagagtagatgatgaataacatataagt-aaatgactcatatacatgtgtct 43215832  T
Q  713 taagattttgggtgaaattgtgatgtccatctcatt 748  Q
     || ||||||| | ||| |||| |||| ||||||||    
T  43215831 aaatattttggataaaaatgtggtgtcaatctcatt 43215796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 618 - 696
Target Start/End: Complemental strand, 8358881 - 8358803
Alignment:
Q  618 atgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagatgac 696  Q
    |||||||||||| |||||||||||||  | | ||| | |||| || ||||||| ||||  |||||||||||||||||||    
T  8358881 atgttaatgtgtcaaatgtgagttaacgttatacactcgatggaagagtagattttgaacaacatataagtgagatgac 8358803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 656 - 706
Target Start/End: Complemental strand, 21586537 - 21586487
Alignment:
Q  656 gatgcaatagtagatgttgagaaacatataagtgagatgactcatatatat 706  Q
    |||| |||||||||||||||  ||||||||||||||||||| || ||||||    
T  21586537 gatggaatagtagatgttgaataacatataagtgagatgacacacatatat 21586487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 281 - 370
Target Start/End: Original strand, 14373561 - 14373650
Alignment:
Q  281 ccgtgccaaacacgggttagaatttcgtcattttcaatggagagaatattgtgatgtatcaagtgtcacttaaatatcaacattggataa 370  Q
    |||||| || |||||| ||||||||||| ||  | || | | ||||||||||||| |||||||||||  |||||  ||||||||||||||    
T  14373561 ccgtgctaagcacgggctagaatttcgttatacttaaggtaaagaatattgtgatttatcaagtgtcgtttaaagctcaacattggataa 14373650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 607 - 668
Target Start/End: Complemental strand, 15277827 - 15277766
Alignment:
Q  607 ttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtag 668  Q
    |||||||||||||||||||||||| | ||| |||||||||  ||||||| | |||| |||||    
T  15277827 ttaatggagagatgttaatgtgtttagtgtaagttaaaatttcacattgtaagcaagagtag 15277766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 607 - 668
Target Start/End: Complemental strand, 15458196 - 15458135
Alignment:
Q  607 ttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtag 668  Q
    |||||||||||||||||||||||| | ||| |||||||||  ||||||| | |||| |||||    
T  15458196 ttaatggagagatgttaatgtgtttagtgtaagttaaaatttcacattgtaagcaagagtag 15458135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 595 - 696
Target Start/End: Original strand, 32916820 - 32916921
Alignment:
Q  595 agagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagatg 694  Q
    ||||||||| | |||| ||||||||| |||||||| |||||||| ||| | |  ||||||||||| ||   |||||  |||| ||||||||| |||||||    
T  32916820 agagtctcacatttaagggagagatgctaatgtgtcaaatgtgacttagagtttcacattggatgtaaatatagataatgagcaacatataactgagatg 32916919  T
Q  695 ac 696  Q
    ||    
T  32916920 ac 32916921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 654 - 695
Target Start/End: Complemental strand, 36754572 - 36754531
Alignment:
Q  654 tggatgcaatagtagatgttgagaaacatataagtgagatga 695  Q
    ||||||||| |||| ||||| |||||||||||||||||||||    
T  36754572 tggatgcaaaagtaaatgttaagaaacatataagtgagatga 36754531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 654 - 695
Target Start/End: Complemental strand, 41528545 - 41528504
Alignment:
Q  654 tggatgcaatagtagatgttgagaaacatataagtgagatga 695  Q
    ||||||||| |||| ||||| |||||||||||||||||||||    
T  41528545 tggatgcaaaagtaaatgttaagaaacatataagtgagatga 41528504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 652 - 727
Target Start/End: Complemental strand, 43216998 - 43216924
Alignment:
Q  652 attggatgcaatagtagatgttgagaaacatataagtgagatgactcatatatataattc-ttaagattttgggtga 727  Q
    |||||||||||  |||||| |||| |||||||||||||||||||   ||||| ||||| | ||||||||||||||||    
T  43216998 attggatgcaa--gtagatcttgaaaaacatataagtgagatgatcaatatacataatgctttaagattttgggtga 43216924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 442 - 746
Target Start/End: Complemental strand, 38016182 - 38015878
Alignment:
Q  442 atgtaacatcattctcacttgtgtgattgctctttctgcaatgcgtcgattcacacaagtgttggctccccataagttccaatggtgatatcatatccgc 541  Q
    ||||||||||||| | ||||||||||||||||||||||||||   |||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||    
T  38016182 atgtaacatcattattacttgtgtgattgctctttctgcaatatatcgattcacacaagtgctggctccccataagtcccaatggcgatatcatatccgc 38016083  T
Q  542 ttcaacatttttggggagcataagtggtttttggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagtt 641  Q
    ||||||||||||| ||| |  ||||||||  |||||||||||||  |||||||| |||||||||||| |||||||||||||||||||| || ||||||||    
T  38016082 ttcaacatttttgtggaacggaagtggttcgtggtggtggatcgtggacacaaa-agtctcatacttgatggagagatgttaatgtgtcaagtgtgagtt 38015984  T
Q  642 aaaataacacattggatgcaatagtagatgttgagaaacatataagtgagatgactcatatatataat-tcttaagattttgggtgaaattgtgatgtcc 740  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||  |||||||||||||||||| ||||||||||     
T  38015983 aaaataacacattgaatgcaatagtagatgttgagcaacatataagtgagatgactcatatatctaatgacttaagattttgggtgaagttgtgatgtca 38015884  T
Q  741 atctca 746  Q
    ||||||    
T  38015883 atctca 38015878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 341 - 560
Target Start/End: Complemental strand, 33014227 - 33014007
Alignment:
Q  341 aagtgtcacttaaatatcaacattggataagatattggaggttgaagaacaaataagtgaaaaataaatcatgtacttaagtcttaaaattttgaatgaa 440  Q
    ||||||||||||||| ||| |||||||||| ||||||||||| ||||||||||||| ||||||| || |||| |||| |||||||||||||||  |||||    
T  33014227 aagtgtcacttaaatctcatcattggataaaatattggaggtcgaagaacaaataaatgaaaaaaaactcatatactaaagtcttaaaattttagatgaa 33014128  T
Q  441 aatgtaacatcattctcacttgtgtgattgctctttctgcaatgcgtcgattcacacaagtgttggctccc-cataagttccaatggtgatatcatatcc 539  Q
    ||||  |||||||||||||||||||| ||| | ||||||||||| ||||| |||||||||||||| |||||   ||||| |||||||||||||||||| |    
T  33014127 aatgcgacatcattctcacttgtgtggttgttttttctgcaatgtgtcgaatcacacaagtgttgtctcccatgtaagtcccaatggtgatatcatatac 33014028  T
Q  540 gcttcaacatttttggggagc 560  Q
    |||||||||||||||||||||    
T  33014027 gcttcaacatttttggggagc 33014007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 292 - 499
Target Start/End: Complemental strand, 42312452 - 42312245
Alignment:
Q  292 acgggttagaatttcgtcattttcaatggagagaatattgtgatgtatcaagtgtcacttaaatatcaacattggataagatattggaggttgaagaaca 391  Q
    |||||||||||||||||||| ||   |||||| |||||||||||||||||||||||| |||| |  |||||| |||| | | | |||| | | || ||||    
T  42312452 acgggttagaatttcgtcatatttggtggagaaaatattgtgatgtatcaagtgtcagttaagtcccaacatcggatgaaagagtggaagataaacaaca 42312353  T
Q  392 aataagtgaaaaataaatcatgtacttaagtcttaaaattttgaatgaaaatgtaacatcattctcact--tgtgtgattgctctttctgcaatgcgtcg 489  Q
    ||||||||||||  |  |||| |||||||| |||||||||||| ||||| |||  ||||||||||||||  ||||||||||||||||||  |||| ||||    
T  42312352 aataagtgaaaa--agttcatatacttaagccttaaaattttggatgaagatgcgacatcattctcacttgtgtgtgattgctctttctataatgtgtcg 42312255  T
Q  490 attcacacaa 499  Q
    ||||| ||||    
T  42312254 attcaaacaa 42312245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 267 - 346
Target Start/End: Complemental strand, 33014399 - 33014320
Alignment:
Q  267 actagtatggacacccgtgccaaacacgggttagaatttcgtcattttcaatggagagaatattgtgatgtatcaagtgt 346  Q
    |||||| ||||||||||||| || |||||| |||||||||||||| || ||||||||| |||||||||||||||||||||    
T  33014399 actagtttggacacccgtgctaagcacgggctagaatttcgtcatatttaatggagaggatattgtgatgtatcaagtgt 33014320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 594 - 709
Target Start/End: Complemental strand, 9012813 - 9012698
Alignment:
Q  594 aagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagat 693  Q
    |||||||||| |||||||||||| || ||||||||| || ||| |||||||||  |||| || || ||| ||||||||||||| |||||||||||||| |    
T  9012813 aagagtctcacacttaatggagacatattaatgtgtcaagtgttagttaaaatttcacaatgaattcaagagtagatgttgagcaacatataagtgagct 9012714  T
Q  694 gactcatatatataat 709  Q
    ||| | |||| |||||    
T  9012713 gacccttatacataat 9012698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 318 - 455
Target Start/End: Original strand, 42313347 - 42313482
Alignment:
Q  318 tggagagaatattgtgatgtatcaagtgtcacttaaatatcaacattggataagatattggaggttgaagaacaaataagtgaaaaataaatcatgtact 417  Q
    ||||||||||||||||||||||||||||||| |||||   ||| ||||||||| | | |||||| |||| |||| || ||||||||  ||  ||| ||||    
T  42313347 tggagagaatattgtgatgtatcaagtgtcagttaaagcccaatattggataaaagagtggaggatgaacaacacattagtgaaaa--aacacatatact 42313444  T
Q  418 taagtcttaaaattttgaatgaaaatgtaacatcattc 455  Q
    |||| ||||||| |||| ||||| ||||  ||||||||    
T  42313445 taagccttaaaaatttggatgaagatgtggcatcattc 42313482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 566 - 710
Target Start/End: Complemental strand, 8128553 - 8128411
Alignment:
Q  566 tggtttttggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatag 665  Q
    |||||| ||||||| |||| || |  || |||||||| ||||| | ||||| |||||||||||| || || |||||||| |  ||||||||||| || ||    
T  8128553 tggtttatggtggtagatctcatatgcagagagtctcgtacttgagggagaaatgttaatgtgtcaagtgcgagttaaagt--cacattggatgtaagag 8128456  T
Q  666 tagatgttgagaaacatataagtgagatgactcatatatataatt 710  Q
    ||||||||||| ||||||||||||  ||||  |||||| ||||||    
T  8128455 tagatgttgagtaacatataagtgttatgatccatatacataatt 8128411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 614 - 703
Target Start/End: Original strand, 9024953 - 9025042
Alignment:
Q  614 agagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagatgactcatata 703  Q
    |||||||||||||||| || ||||||||||||| | | | |||||  || ||||||| ||||  ||||||||||||||||||||||||||    
T  9024953 agagatgttaatgtgtcaagtgtgagttaaaattatatagtggatagaagagtagattttgaataacatataagtgagatgactcatata 9025042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 592 - 709
Target Start/End: Original strand, 20966097 - 20966214
Alignment:
Q  592 caaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgag 691  Q
    |||| ||||||||| ||||  || |||||||||||||| || ||||| ||||| |  |||||||||||||||| ||||||||||   |||||||| | |     
T  20966097 caaaaagtctcatatttaagagaaagatgttaatgtgtcaagtgtgatttaaagttccacattggatgcaataatagatgttgaacgacatataaattat 20966196  T
Q  692 atgactcatatatataat 709  Q
    ||||||||||||| ||||    
T  20966197 atgactcatatatctaat 20966214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 595 - 689
Target Start/End: Original strand, 4062139 - 4062231
Alignment:
Q  595 agagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtg 689  Q
    |||||||| ||||| | ||||| |||||||||||| || || |||||||| |  ||||||||||| || ||||||||||||| ||||||||||||    
T  4062139 agagtctcgtacttgagggagaaatgttaatgtgtcaagtgcgagttaaagt--cacattggatgtaagagtagatgttgagtaacatataagtg 4062231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 542 - 703
Target Start/End: Complemental strand, 19910759 - 19910595
Alignment:
Q  542 ttcaacatttttggggagcataagtggtttttggtggtggatcgcagacacaa---agagtctcatacttaatggagagatgttaatgtgttaaatgtga 638  Q
    ||||||||| | ||| ||||| |||||||||| || ||||||| ||||||  |   ||||||| | |||| ||  | ||||||||||| |  |||||||     
T  19910759 ttcaacattgtggggaagcatgagtggtttttagtagtggatcacagacaacatagagagtctaacacttgatataaagatgttaatgcgacaaatgtgt 19910660  T
Q  639 gttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagatgactcatata 703  Q
    || |||||  ||||||| |||||| ||||||| ||||  |||||||||||||||||| |||||||    
T  19910659 gtcaaaattccacattgtatgcaagagtagatattgaacaacatataagtgagatgagtcatata 19910595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 595 - 660
Target Start/End: Complemental strand, 11770464 - 11770399
Alignment:
Q  595 agagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgc 660  Q
    |||||||||||||||| ||||||| ||||||||||  ||||||| ||||| | |||||||||||||    
T  11770464 agagtctcatacttaagggagagaagttaatgtgtcgaatgtgatttaaagttacacattggatgc 11770399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 266 - 355
Target Start/End: Complemental strand, 32259502 - 32259413
Alignment:
Q  266 aactagtatggacacccgtgccaaacacgggttagaatttcgtcattttcaatggagagaatattgtgatgtatcaagtgtcacttaaat 355  Q
    |||||||||||||||||||||||| |||||  || |||||||||||  |  | ||||| |||||| ||||||||| ||||||| ||||||    
T  32259502 aactagtatggacacccgtgccaagcacggactaaaatttcgtcatagttgagggagacaatattatgatgtatctagtgtcagttaaat 32259413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 267 - 388
Target Start/End: Complemental strand, 38016303 - 38016182
Alignment:
Q  267 actagtatggacacccgtgccaaacacgggttagaatttcgtcattttcaatggagagaatattgtgatgtatcaagtgtcacttaaatatcaacattgg 366  Q
    ||||||||||||| |||||| ||  || || |||||||| |||||  || | ||| ||||||||||||||||  || ||||| |||||| | ||||||||    
T  38016303 actagtatggacatccgtgctaattacaggctagaattttgtcatcctcgaaggatagaatattgtgatgtaataaatgtcaattaaatcttaacattgg 38016204  T
Q  367 ataagatattggaggttgaaga 388  Q
    |||| ||||| |||||| ||||    
T  38016203 ataaaatattagaggtttaaga 38016182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 592 - 644
Target Start/End: Original strand, 9048607 - 9048658
Alignment:
Q  592 caaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaa 644  Q
    |||||| |||||||||||| |||||||||||||||||||| ||||||||||||    
T  9048607 caaagaatctcatacttaa-ggagagatgttaatgtgttatatgtgagttaaa 9048658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 267 - 311
Target Start/End: Original strand, 9022785 - 9022829
Alignment:
Q  267 actagtatggacacccgtgccaaacacgggttagaatttcgtcat 311  Q
    |||||||||||||| |||||||| ||||| |||||||||||||||    
T  9022785 actagtatggacactcgtgccaagcacggattagaatttcgtcat 9022829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 264 - 404
Target Start/End: Complemental strand, 42955443 - 42955306
Alignment:
Q  264 ataactagtatggacacccgtgccaaacacgggttagaatttcgtcattttcaatggagagaa-tattgtgatgtatcaagtgtcacttaaatatcaaca 362  Q
    ||||||||||||||||| |||||||| |||| | ||||||||| || | ||  |   ||| || |||||||||||||||||||    |||||| ||||||    
T  42955443 ataactagtatggacactcgtgccaagcacgagctagaatttcatcgtatttgagaaagaaaaatattgtgatgtatcaagtg----ttaaatttcaaca 42955348  T
Q  363 ttggataagatattggaggttgaagaacaaataagtgaaaaa 404  Q
    ||| |||| | | | ||||||||| |||||||||| ||||||    
T  42955347 ttgaataaaaaagtagaggttgaacaacaaataagcgaaaaa 42955306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 595 - 689
Target Start/End: Complemental strand, 7333027 - 7332935
Alignment:
Q  595 agagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtg 689  Q
    ||||| || ||||| | ||||| |||||||||||| || || ||||| ||||  ||||||||||| || ||||||| ||||| ||||||||||||    
T  7333027 agagtttcgtacttgagggagaaatgttaatgtgtcaagtgcgagttcaaat--cacattggatgtaagagtagatattgagtaacatataagtg 7332935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 595 - 701
Target Start/End: Complemental strand, 19319006 - 19318902
Alignment:
Q  595 agagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagatg 694  Q
    ||||||||| |||||||  |||||||||| ||||| | || ||||||||| |  ||||||| |||||  |||||||  ||||| | ||||||||||||||    
T  19319006 agagtctcacacttaat--agagatgttattgtgtcatatatgagttaaatttccacattgaatgcacgagtagatagtgagataaatataagtgagatg 19318909  T
Q  695 actcata 701  Q
    || ||||    
T  19318908 acacata 19318902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 618 - 703
Target Start/End: Complemental strand, 29865942 - 29865859
Alignment:
Q  618 atgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagatgactcatata 703  Q
    |||||||||||| || || |||||||| |  ||||||||||| || ||| ||||||||| ||||||||||||  |||| |||||||    
T  29865942 atgttaatgtgtcaagtgcgagttaaagt--cacattggatgtaagagttgatgttgagtaacatataagtgttatgattcatata 29865859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 267 - 308
Target Start/End: Complemental strand, 7333247 - 7333206
Alignment:
Q  267 actagtatggacacccgtgccaaacacgggttagaatttcgt 308  Q
    ||||||||||| |||||||||||||||| | |||||||||||    
T  7333247 actagtatggaaacccgtgccaaacacgagctagaatttcgt 7333206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 595 - 704
Target Start/End: Complemental strand, 27594666 - 27594557
Alignment:
Q  595 agagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagatg 694  Q
    ||||| |||||||| |  || ||| ||||| |||| || ||||| ||||| |  ||||||| |||||||| ||||||||||  ||||||||||||| ||     
T  27594666 agagtgtcatacttgacagaaagaggttaacgtgtcaagtgtgatttaaagttccacattgaatgcaataatagatgttgaacaacatataagtgatata 27594567  T
Q  695 actcatatat 704  Q
    || |||||||    
T  27594566 acccatatat 27594557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 598 - 655
Target Start/End: Complemental strand, 33013997 - 33013940
Alignment:
Q  598 gtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattg 655  Q
    ||||| || ||||| |||||||| |||||||| || |||| |||||||||||||||||    
T  33013997 gtctcgtatttaattgagagatgctaatgtgtcaagtgtgggttaaaataacacattg 33013940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 164; Significance: 3e-87; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 467 - 728
Target Start/End: Original strand, 1599542 - 1599805
Alignment:
Q  467 attgctctttctgcaatgcgtcgattcacacaagtgttggctcccc-ataagttccaatggtgatatcatatccgcttcaacatttttggggagcataag 565  Q
    |||||||||||||||||| |||||||||||||||| |||||||||| |||||| |||| |||||||||||||  |||||||||||||| ||||||  |||    
T  1599542 attgctctttctgcaatgtgtcgattcacacaagtattggctcccccataagtcccaaaggtgatatcatatatgcttcaacattttttgggagcggaag 1599641  T
Q  566 tggtttttggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatag 665  Q
    |||| | ||||||||||| ||||| ||| |||||||||| |||||| ||||||||||||||||| || |||||||||||||||||||||| |||||||||    
T  1599642 tggtatgtggtggtggatagcagatacagagagtctcatgcttaatagagagatgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatag 1599741  T
Q  666 tagatgttgagaaacatataagtgagatgactcatatatataat-tcttaagattttgggtgaa 728  Q
    ||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||    
T  1599742 tagatgttgagaaacatataagtgagatgactcatgtatctaatgtcttaagattttgggtgaa 1599805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 452 - 664
Target Start/End: Original strand, 26894748 - 26894961
Alignment:
Q  452 attctcacttgtgtgattgctctttctgcaatgcgtcgattcacacaagtgttggct-ccccataagttccaatggtgatatcatatccgcttcaacatt 550  Q
    ||||||| |||||||||| |||||||||||||| ||  |||||||||| |||||||| |||||||||| |||||  |||||| |||||| ||||||||||    
T  26894748 attctcatttgtgtgatttctctttctgcaatgtgtgtattcacacaactgttggctaccccataagtcccaataatgatataatatccacttcaacatt 26894847  T
Q  551 tttggggagcataagtggtttttggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataaca 650  Q
    || ||||||   ||||||||  ||||||||||| ||||||||  | ||||||||||||||||||||||||||||| | | || ||||| |||||||||||    
T  26894848 ttaggggagtggaagtggttcatggtggtggattgcagacacggatagtctcatacttaatggagagatgttaatatatcaagtgtgatttaaaataaca 26894947  T
Q  651 cattggatgcaata 664  Q
    ||||||||||||||    
T  26894948 cattggatgcaata 26894961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 267 - 472
Target Start/End: Original strand, 1594479 - 1594684
Alignment:
Q  267 actagtatggacacccgtgccaaacacgggttagaatttcgtcattttcaatggagagaatattgtgatgtatcaagtgtcacttaaatatcaacattgg 366  Q
    ||||| |||||||| |||||||| ||| || ||||||||||||||  | || |||||||||||||| | |||| || |||   |||||| |||| |||||    
T  1594479 actagcatggacactcgtgccaagcacaggctagaatttcgtcatccttaagggagagaatattgtaaagtattaaatgtatgttaaatctcaatattgg 1594578  T
Q  367 ataagatattggaggttgaagaacaaataagtgaaaaataaatcatgtacttaagtcttaaaattttgaatgaaaatgtaacatcattctcacttgtgtg 466  Q
    |||| ||||||||||||||| |  |||||||||||||  || |||| |||||||| ||| |||||||| ||||| ||||||||||||| ||||| |||||    
T  1594579 ataaaatattggaggttgaatagtaaataagtgaaaataaactcatatacttaagactttaaattttggatgaagatgtaacatcattatcactcgtgtg 1594678  T
Q  467 attgct 472  Q
    ||||||    
T  1594679 attgct 1594684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 270 - 391
Target Start/End: Original strand, 26894607 - 26894728
Alignment:
Q  270 agtatggacacccgtgccaaacacgggttagaatttcgtcattttcaatggagagaatattgtgatgtatcaagtgtcacttaaatatcaacattggata 369  Q
    |||||||||||||||| ||| |||  | |||||||||||||| ||  | |||||||||||||||||||| ||| ||| | |||||  |||||||||||||    
T  26894607 agtatggacacccgtgtcaatcacaagctagaatttcgtcatctttgaaggagagaatattgtgatgtaacaactgttagttaaacctcaacattggata 26894706  T
Q  370 agatattggaggttgaagaaca 391  Q
    | ||||||||||||||||||||    
T  26894707 aaatattggaggttgaagaaca 26894728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 572 - 709
Target Start/End: Complemental strand, 7428605 - 7428469
Alignment:
Q  572 ttggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatg 671  Q
    |||||||||||   || |||||||||  || | ||||||||||||||||||||||||| || |||||||||||||   | |||| ||||||||||||||     
T  7428605 ttggtggtggactacaaacacaaagatcctgacacttaatggagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtagat- 7428507  T
Q  672 ttgagaaacatataagtgagatgactcatatatataat 709  Q
     |||||||||| |||||||||||||||| ||| |||||    
T  7428506 atgagaaacatttaagtgagatgactcacatacataat 7428469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 572 - 699
Target Start/End: Complemental strand, 16279200 - 16279074
Alignment:
Q  572 ttggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatg 671  Q
    |||||||||||   || |||||||||  || | |||||||||| |||||||||||||| || ||| |||||||||   | |||| ||||||||||||||     
T  16279200 ttggtggtggactacaaacacaaagatcctgacacttaatggacagatgttaatgtgtcaagtgtaagttaaaattttatattgtatgcaatagtagat- 16279102  T
Q  672 ttgagaaacatataagtgagatgactca 699  Q
     |||||||||| ||||||||||||||||    
T  16279101 atgagaaacatttaagtgagatgactca 16279074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 620 - 703
Target Start/End: Complemental strand, 31737288 - 31737205
Alignment:
Q  620 gttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagatgactcatata 703  Q
    |||||||||| || |||||||||||||  |||||||||||||| ||||||||||||  |||||| |||||| |||| |||||||    
T  31737288 gttaatgtgtcaattgtgagttaaaatttcacattggatgcaagagtagatgttgaacaacatacaagtgatatgattcatata 31737205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 319 - 510
Target Start/End: Original strand, 20873525 - 20873715
Alignment:
Q  319 ggagagaatattgtgatgtatcaagtgtcacttaaatatcaacattggataagatattggaggttgaagaacaaataagt-gaaaaataaatcatgtact 417  Q
    |||||||||||| ||||||||  ||  ||| |||||  | |||||||||||| ||| ||||||||||  ||||||||||| |||||| |||||  ||||     
T  20873525 ggagagaatattatgatgtattgagcatcagttaaaactaaacattggataaaatagtggaggttgattaacaaataagtggaaaaaaaaatc--gtacg 20873622  T
Q  418 taagtcttaaaattttgaatgaaaatgtaacatcattctcacttgtgtgattgctctttctgcaatgcgtcgattcacacaagtgttggctcc 510  Q
    ||||  ||||||||| | ||||| |||||  | ||||| ||||||| || ||| || |||| ||||| |||||| |||| || ||||||||||    
T  20873623 taagcattaaaatttgggatgaagatgtagtagcattcgcacttgtttggttgttccttctccaatgtgtcgatccacataaatgttggctcc 20873715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 595 - 689
Target Start/End: Complemental strand, 23410180 - 23410088
Alignment:
Q  595 agagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtg 689  Q
    |||||||| ||||| | ||||| |||||||||||| || || |||||||| |  ||||||||||| || ||||||||||||| ||||||||||||    
T  23410180 agagtctcgtacttgagggagaaatgttaatgtgtcaagtgcgagttaaagt--cacattggatgtaagagtagatgttgagtaacatataagtg 23410088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 591 - 748
Target Start/End: Complemental strand, 11554492 - 11554334
Alignment:
Q  591 acaaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtga 690  Q
    ||||||||||||| | ||||  ||||||||||||||||| |  ||||||||||  |   ||||||||||||  ||||| |||| |  ||||||| |||||    
T  11554492 acaaagagtctcaaagttaaaagagagatgttaatgtgtcatgtgtgagttaaccttctacattggatgcaggagtagttgttaaacaacatattagtga 11554393  T
Q  691 gatgactcatatatataat-tcttaagattttgggtgaaattgtgatgtccatctcatt 748  Q
    |||||| ||| ||  |||| ||||||| |||||||| ||| |||| |||| ||||||||    
T  11554392 gatgacccatgtacctaatgtcttaaggttttgggtcaaaatgtggtgtcaatctcatt 11554334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 566 - 689
Target Start/End: Original strand, 20872435 - 20872556
Alignment:
Q  566 tggtttttggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatag 665  Q
    |||||| ||||||| |||| || |  || |||||||| ||||| | ||||| ||||||| |||| || ||||||||||| |  ||||||||||| || ||    
T  20872435 tggtttatggtggtagatctcatatgcagagagtctcgtacttgagggagaaatgttaacgtgtcaagtgtgagttaaagt--cacattggatgtaagag 20872532  T
Q  666 tagatgttgagaaacatataagtg 689  Q
    ||||||||||| | ||||||||||    
T  20872533 tagatgttgagtagcatataagtg 20872556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 649 - 704
Target Start/End: Original strand, 21984208 - 21984263
Alignment:
Q  649 cacattggatgcaatagtagatgttgagaaacatataagtgagatgactcatatat 704  Q
    ||||||||||||||||||| |||||||  || |||||||||| |||||||||||||    
T  21984208 cacattggatgcaatagtaaatgttgaacaatatataagtgatatgactcatatat 21984263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 572 - 695
Target Start/End: Original strand, 28365691 - 28365813
Alignment:
Q  572 ttggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatg 671  Q
    |||||||||||   || |||||||||  || | |||||||||| |||||||||||||| || ||| |||||||||   | |||| ||||||||||| ||     
T  28365691 ttggtggtggactacaaacacaaagatcctgacacttaatggacagatgttaatgtgtcaagtgtaagttaaaattttatattgtatgcaatagtatat- 28365789  T
Q  672 ttgagaaacatataagtgagatga 695  Q
     |||||||||| ||||||||||||    
T  28365790 atgagaaacatttaagtgagatga 28365813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 595 - 696
Target Start/End: Original strand, 4031519 - 4031618
Alignment:
Q  595 agagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagatg 694  Q
    |||||||||||||||| | |||||||||||||||| ||  |||||||||  |  |||||| |||  || ||| ||||||||| ||||||||||||| |||    
T  4031519 agagtctcatacttaaggaagagatgttaatgtgtcaa--gtgagttaaggttccacattagatataagagtggatgttgagcaacatataagtgatatg 4031616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 591 - 748
Target Start/End: Original strand, 4852786 - 4852944
Alignment:
Q  591 acaaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtga 690  Q
    ||||||||||||| | ||||  ||||||||||||||||| |  ||||||||||  |   ||||||||||||  ||||| |||| |  ||||||| |||||    
T  4852786 acaaagagtctcaaagttaaaagagagatgttaatgtgtcatgtgtgagttaaccttctacattggatgcaggagtagttgttaaacaacatattagtga 4852885  T
Q  691 gatgactcatatatataat-tcttaagattttgggtgaaattgtgatgtccatctcatt 748  Q
    |||||| ||| ||   ||| |||||||||||||| | ||| |||| |||| ||||||||    
T  4852886 gatgacccatgtaccgaatgtcttaagattttggatcaaaatgtggtgtcaatctcatt 4852944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 618 - 696
Target Start/End: Original strand, 15878847 - 15878925
Alignment:
Q  618 atgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagatgac 696  Q
    |||||||||||| |||||||||||||  | | |||||||||| || ||||||| ||||  ||||||||| |||||||||    
T  15878847 atgttaatgtgtcaaatgtgagttaacgttatacattggatggaagagtagattttgaacaacatataattgagatgac 15878925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 282 - 347
Target Start/End: Original strand, 4029627 - 4029692
Alignment:
Q  282 cgtgccaaacacgggttagaatttcgtcattttcaatggagagaatattgtgatgtatcaagtgtc 347  Q
    |||| ||||||||||||||||||| ||||| || ||  |||||||| || ||||||||||||||||    
T  4029627 cgtgtcaaacacgggttagaatttagtcatatttaaatgagagaatgttatgatgtatcaagtgtc 4029692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 592 - 709
Target Start/End: Complemental strand, 19660429 - 19660312
Alignment:
Q  592 caaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgag 691  Q
    |||||||||||||||||||  ||  |||| || |||||||| ||||||||||| |  | ||||| || ||| ||||| ||||||  ||||||||| |||     
T  19660429 caaagagtctcatacttaagagatggatgatagtgtgttaagtgtgagttaaagttcctcattgaatccaagagtagttgttgaacaacatataaatgat 19660330  T
Q  692 atgactcatatatataat 709  Q
    ||| ||||||||| ||||    
T  19660329 atgcctcatatatctaat 19660312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 301 - 404
Target Start/End: Original strand, 2976423 - 2976526
Alignment:
Q  301 aatttcgtcattttcaatggagagaatattgtgatgtatcaagtgtcacttaaatatcaacattggataagatattggaggttgaagaacaaataagtga 400  Q
    ||||||||||| || ||  || ||||||||||| |||||||| ||| | |||||  |||||||||||| | | | |||| || ||| |||||||||||||    
T  2976423 aatttcgtcatatttaagagaaagaatattgtgttgtatcaaatgttaattaaagttcaacattggatgaaagaatggaagtggaacaacaaataagtga 2976522  T
Q  401 aaaa 404  Q
    ||||    
T  2976523 aaaa 2976526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 608 - 739
Target Start/End: Original strand, 24175010 - 24175141
Alignment:
Q  608 taatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagatgactcatatatata 707  Q
    ||||||| || ||||||||||| || ||||| |||||||     | || |||||||| || |||||||| ||||||||||||||||||| | ||||  ||    
T  24175010 taatggatagttgttaatgtgtcaagtgtgaattaaaattcagtaatgtatgcaataatatatgttgagcaacatataagtgagatgacccttataccta 24175109  T
Q  708 attcttaagattttgggtgaaattgtgatgtc 739  Q
    ||  |||||| ||| ||||||  |||||||||    
T  24175110 atgtttaagacttttggtgaagatgtgatgtc 24175141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 564 - 703
Target Start/End: Complemental strand, 29214412 - 29214273
Alignment:
Q  564 agtggtttttggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaat 663  Q
    ||||||| ||||||||||||| |  ||||  ||||  ||| |||||||| ||| ||||||| | ||||| | | |||||||||  ||||||| ||| ||     
T  29214412 agtggttcttggtggtggatcacccacacggagagcatcacacttaatgaagatatgttaacgagttaagtttaagttaaaattccacattgtatgaaaa 29214313  T
Q  664 agtagatgttgagaaacatataagtgagatgactcatata 703  Q
    || |  ||||||  |||||| |||||||||||||||||||    
T  29214312 agcaattgttgaacaacatacaagtgagatgactcatata 29214273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 649 - 704
Target Start/End: Complemental strand, 33350346 - 33350291
Alignment:
Q  649 cacattggatgcaatagtagatgttgagaaacatataagtgagatgactcatatat 704  Q
    ||||||| ||||||||||| |||||||  || |||||||||| |||||||||||||    
T  33350346 cacattgaatgcaatagtaaatgttgaacaatatataagtgatatgactcatatat 33350291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 257 - 510
Target Start/End: Complemental strand, 34516987 - 34516738
Alignment:
Q  257 attagtaataactagtatggacacccgtgccaaacacgggttagaatttcgtcattttcaatggagagaatattgtgatgtatcaagtgtcacttaaata 356  Q
    |||||||||| |||| ||||||||| ||||||| |||||| |||||||  ||||  || || |||||  ||||||||||||| |||  |||| |||||      
T  34516987 attagtaata-ctagcatggacacctgtgccaagcacgggctagaattctgtcaaatttaagggagatgatattgtgatgtagcaaaagtcagttaaaat 34516889  T
Q  357 tcaacattggataagatattggaggttgaagaacaaataagtgaaaaataaatcatgtacttaagtcttaaa-attttgaatgaaaatgtaacatcattc 455  Q
    |||||||| ||| | | | || |||||||| | ||||  ||||||||| ||||||  |||||||| ||||||  ||||  ||| || ||||   |||||     
T  34516888 tcaacattagatgaaagagtgcaggttgaacatcaaaagagtgaaaaa-aaatca--tacttaagccttaaatttttttgatgtaattgtagtctcattt 34516792  T
Q  456 tcacttgtgtgattgctctttctgcaatgcgtcgattcacacaagtgttggctcc 510  Q
    |||| |||||| |||| |||||| ||||| |||||| ||||  ||||||||||||    
T  34516791 tcac-tgtgtggttgccctttctccaatgtgtcgatccacattagtgttggctcc 34516738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 649 - 695
Target Start/End: Complemental strand, 4791671 - 4791625
Alignment:
Q  649 cacattggatgcaatagtagatgttgagaaacatataagtgagatga 695  Q
    |||||||||||| |||||| |||||||| ||||||||||||| ||||    
T  4791671 cacattggatgcgatagtaaatgttgagcaacatataagtgatatga 4791625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 652 - 710
Target Start/End: Complemental strand, 9452907 - 9452849
Alignment:
Q  652 attggatgcaatagtagatgttgagaaacatataagtgagatgactcatatatataatt 710  Q
    |||||||||||  || ||||||||| ||||||||||||| ||||| ||||||| |||||    
T  9452907 attggatgcaagcgtcgatgttgagtaacatataagtgatatgacccatatatctaatt 9452849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 606 - 644
Target Start/End: Original strand, 20874193 - 20874231
Alignment:
Q  606 cttaatggagagatgttaatgtgttaaatgtgagttaaa 644  Q
    ||||| |||||||||||||||||| ||||||||||||||    
T  20874193 cttaagggagagatgttaatgtgtcaaatgtgagttaaa 20874231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 265 - 346
Target Start/End: Complemental strand, 26597980 - 26597899
Alignment:
Q  265 taactagtatggacacccgtgccaaacacgggttagaatttcgtcattttcaatggagagaatattgtgatgtatcaagtgt 346  Q
    ||||||||||||||| ||||| ||| |||   | | ||||||||||||||  ||||||| |||||| | |||||||||||||    
T  26597980 taactagtatggacatccgtgtcaagcacatataacaatttcgtcattttttatggagaaaatattatcatgtatcaagtgt 26597899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 131; Significance: 1e-67; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 267 - 556
Target Start/End: Complemental strand, 50332353 - 50332063
Alignment:
Q  267 actagtatggacacccgtgccaaacacgggttagaatttcgtcattttcaatggagagaatattgtgatgtatcaagtgtcacttaaatatcaacattgg 366  Q
    ||||| |||||||| |||||||| || ||| ||||||||||||||  | || |||||||||||||| ||||||  | |||   |||||| |||| |||||    
T  50332353 actaggatggacactcgtgccaagcatgggctagaatttcgtcatccttaagggagagaatattgtaatgtattgaatgtatgttaaatctcaatattgg 50332254  T
Q  367 ataagatattggaggttgaagaacaaataagtgaaaaataaatcatgtacttaagtcttaaaattttgaatgaaaatgtaacatcattctcacttgtgtg 466  Q
    |||| ||||| |||||||||||  |||||||||||||  || |||| |||||||  ||| |||||||| ||||| ||||||||||||| ||||| |||||    
T  50332253 ataaaatattagaggttgaagagtaaataagtgaaaataaactcatatacttaatactttaaattttggatgaagatgtaacatcattatcactcgtgtg 50332154  T
Q  467 attgctctttctgcaatgcgtcgattcacacaagtgttggct-ccccataagttccaatggtgatatcatatccgcttcaacatttttggg 556  Q
    |||||||||||||||||| | ||||||||||||| ||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||    
T  50332153 attgctctttctgcaatgtgacgattcacacaagcgttggctcccccataagtcccaatggtgatatcatatctgcttcaacatttttggg 50332063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 595 - 735
Target Start/End: Complemental strand, 50332056 - 50331915
Alignment:
Q  595 agagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagatg 694  Q
    ||||| |||| |||||| ||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  50332056 agagtttcatgcttaatagagagatgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatagtagatgttgagaaacatataagtgagatg 50331957  T
Q  695 actcatatatataat-tcttaagattttgggtgaaattgtga 735  Q
    |||||| ||| |||| ||||||||||||||||||| ||||||    
T  50331956 actcatgtatctaatgtcttaagattttgggtgaagttgtga 50331915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 361 - 660
Target Start/End: Original strand, 36095859 - 36096164
Alignment:
Q  361 cattggataagatattggaggttgaagaacaaataagtgaaaa-----ataaatcatgtacttaagtcttaaaattttgaatgaaaatgtaacatcattc 455  Q
    |||||||||| ||||||||||| ||| ||||||||||||||||     | ||| |   |||| ||| |||||||||||| | ||| |||  |||||||||    
T  36095859 cattggataaaatattggaggtcgaaaaacaaataagtgaaaaggaaaaaaaaactcatactaaagccttaaaattttggaagaagatgcgacatcattc 36095958  T
Q  456 tcacttgtgtgattgctctttctgcaatgcgtcgattcacacaagtgttggctcccca-taagttccaatggtgatatcatatccgcttcaacatttttg 554  Q
    |||| | |||| ||| | ||||||||||| ||||| ||||||||||||||  |||||  || || |||||||||||||||||| ||||||||||||||||    
T  36095959 tcacctttgtggttgttttttctgcaatgtgtcgaatcacacaagtgttgtatcccccgtatgtcccaatggtgatatcatatacgcttcaacatttttg 36096058  T
Q  555 gggagcataagtggtttttggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacatt 654  Q
    ||||||  ||||| ||  |||||||||||||| ||||| |||||| || || ||||| |||||||  |||||||| || |||| |||||||||| |||||    
T  36096059 gggagcggaagtgcttcgtggtggtggatcgcggacacgaagagtatcgtatttaattgagagattgtaatgtgtcaagtgtgggttaaaataatacatt 36096158  T
Q  655 ggatgc 660  Q
    | ||||    
T  36096159 gaatgc 36096164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 361 - 586
Target Start/End: Complemental strand, 12746326 - 12746101
Alignment:
Q  361 cattggataagatattggaggttgaagaacaaataagtgaaaaataaatcatgtacttaagtcttaaaattttgaatgaaaatgtaacatcattctcact 460  Q
    |||| ||||| ||||||||| | ||||||||||||||||||||| || |||| |||  ||  |||||||||||| ||||| |||  ||||||||||||||    
T  12746326 cattcgataaaatattggagatcgaagaacaaataagtgaaaaaaaactcatataccaaaaccttaaaattttggatgaagatgcgacatcattctcact 12746227  T
Q  461 tgtgtgattgctctttctgcaatgcgtcgattcacacaagtgttggctcccc-ataagttccaatggtgatatcatatccgcttcaacatttttggggag 559  Q
    |||||||||||| | |||||||||  |||| |||||||||||||| ||||||  ||| | |||||||||||||||||| ||||||||||||||||| |||    
T  12746226 tgtgtgattgct-tctctgcaatgtatcgaatcacacaagtgttgtctcccctgtaattcccaatggtgatatcatatacgcttcaacatttttggagag 12746128  T
Q  560 cataagtggtttttggtggtggatcgc 586  Q
    |  || || ||| ||||||||||||||    
T  12746127 cggaaatgctttgtggtggtggatcgc 12746101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 605 - 709
Target Start/End: Complemental strand, 20935084 - 20934981
Alignment:
Q  605 acttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagatgactcatatat 704  Q
    ||||||||||||||||||||||||| |  |||||||||||||   | |||| ||||||||||||||| |||||||||| ||||||||||||||||||||     
T  20935084 acttaatggagagatgttaatgtgtcaggtgtgagttaaaattttatattgtatgcaatagtagatg-tgagaaacatttaagtgagatgactcatatac 20934986  T
Q  705 ataat 709  Q
    |||||    
T  20934985 ataat 20934981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 568 - 709
Target Start/End: Complemental strand, 32976595 - 32976455
Alignment:
Q  568 gtttttggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagta 667  Q
    ||||| |||||||||   || |||||||||  || | ||||||||||||||||||||||| | || |||||||||||||   | |||| |||||||||||    
T  32976595 gttttgggtggtggactacaaacacaaagatcctaacacttaatggagagatgttaatgtatcaagtgtgagttaaaattttatattgtatgcaatagta 32976496  T
Q  668 gatgttgagaaacatataagtgagatgactcatatatataat 709  Q
    |||  |||||||||| |||||||||||||||||||| |||||    
T  32976495 gat-atgagaaacatttaagtgagatgactcatatacataat 32976455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 266 - 354
Target Start/End: Complemental strand, 12746513 - 12746425
Alignment:
Q  266 aactagtatggacacccgtgccaaacacgggttagaatttcgtcattttcaatggagagaatattgtgatgtatcaagtgtcacttaaa 354  Q
    ||||||| |||||||||||| ||| || ||| ||||||||| |||| || |||||||||||||||||||||||| |||||||| |||||    
T  12746513 aactagtttggacacccgtgtcaagcatgggctagaatttcatcatatttaatggagagaatattgtgatgtattaagtgtcagttaaa 12746425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 605 - 709
Target Start/End: Complemental strand, 42400470 - 42400367
Alignment:
Q  605 acttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagatgactcatatat 704  Q
    ||||||||||||||||||||||||| |  |||||||||||||   | |||| ||||||||||||||  |||||||||| |||||||||||||||| |||     
T  42400470 acttaatggagagatgttaatgtgtcacgtgtgagttaaaattttatattgtatgcaatagtagat-atgagaaacatttaagtgagatgactcacatac 42400372  T
Q  705 ataat 709  Q
    |||||    
T  42400371 ataat 42400367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 606 - 684
Target Start/End: Original strand, 431968 - 432046
Alignment:
Q  606 cttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatat 684  Q
    |||||||||||||| ||||||||| || |||||||||||||   ||||||||||||| |||| ||||||||||||||||    
T  431968 cttaatggagagatattaatgtgtcaattgtgagttaaaattcgacattggatgcaagagtatatgttgagaaacatat 432046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 605 - 709
Target Start/End: Original strand, 17764120 - 17764223
Alignment:
Q  605 acttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagatgactcatatat 704  Q
    ||||||||||||||||||||||||  || |||||||||||||  ||||||| | || | |||| ||| |||| |||||||||||||||| |||||||||     
T  17764120 acttaatggagagatgttaatgtgacaagtgtgagttaaaattccacattgtaagccagagtatatg-tgagcaacatataagtgagattactcatatac 17764218  T
Q  705 ataat 709  Q
    |||||    
T  17764219 ataat 17764223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 605 - 709
Target Start/End: Original strand, 19065440 - 19065543
Alignment:
Q  605 acttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagatgactcatatat 704  Q
    ||||||||||||||||||||||||  || |||||||||||||  ||||||| | || | |||| ||| |||| |||||||||||||||| |||||||||     
T  19065440 acttaatggagagatgttaatgtgacaagtgtgagttaaaattccacattgtaagccagagtatatg-tgagcaacatataagtgagattactcatatac 19065538  T
Q  705 ataat 709  Q
    |||||    
T  19065539 ataat 19065543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 266 - 344
Target Start/End: Complemental strand, 10976849 - 10976771
Alignment:
Q  266 aactagtatggacacccgtgccaaacacgggttagaatttcgtcattttcaatggagagaatattgtgatgtatcaagt 344  Q
    ||||||||||||||||| ||||||  ||||| |||||||||||||| ||  | ||||||||||||||||||| ||||||    
T  10976849 aactagtatggacacccatgccaagtacgggctagaatttcgtcatatttgagggagagaatattgtgatgtttcaagt 10976771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 267 - 353
Target Start/End: Original strand, 17763830 - 17763916
Alignment:
Q  267 actagtatggacacccgtgccaaacacgggttagaatttcgtcattttcaatggagagaatattgtgatgtatcaagtgtcacttaa 353  Q
    ||||||||||||||||||||||| |||||| |||||||||||||| ||  | | | ||||| |||||| ||||||||||||| ||||    
T  17763830 actagtatggacacccgtgccaagcacgggctagaatttcgtcatatttgaggcaaagaatgttgtgacgtatcaagtgtcagttaa 17763916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 267 - 353
Target Start/End: Original strand, 19065150 - 19065236
Alignment:
Q  267 actagtatggacacccgtgccaaacacgggttagaatttcgtcattttcaatggagagaatattgtgatgtatcaagtgtcacttaa 353  Q
    ||||||||||||||||||||||| |||||| |||||||||||||| ||  | | | ||||| |||||| ||||||||||||| ||||    
T  19065150 actagtatggacacccgtgccaagcacgggctagaatttcgtcatatttgaggcaaagaatgttgtgacgtatcaagtgtcagttaa 19065236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 269 - 355
Target Start/End: Original strand, 50239313 - 50239399
Alignment:
Q  269 tagtatggacacccgtgccaaacacgggttagaatttcgtcattttcaatggagagaatattgtgatgtatcaagtgtcacttaaat 355  Q
    ||||||||||||||||||||| |||||| ||||||||||||||  |  | ||||| |||||| ||||||||| ||||||| ||||||    
T  50239313 tagtatggacacccgtgccaagcacgggctagaatttcgtcatggttgagggagacaatattatgatgtatctagtgtcagttaaat 50239399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 266 - 311
Target Start/End: Complemental strand, 6088420 - 6088375
Alignment:
Q  266 aactagtatggacacccgtgccaaacacgggttagaatttcgtcat 311  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  6088420 aactagtatggacacccgtgccaagcacgggttagaatttcgtcat 6088375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 595 - 704
Target Start/End: Original strand, 40056505 - 40056614
Alignment:
Q  595 agagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagatg 694  Q
    |||||||||||||| |  || ||||||||| |||| || ||||| ||||| |  |||||||||||||||| ||||||||||  ||||||||||||| ||     
T  40056505 agagtctcatacttgagagaaagatgttaacgtgtcaagtgtgatttaaagttccacattggatgcaataatagatgttgaacaacatataagtgatata 40056604  T
Q  695 actcatatat 704  Q
    || |||||||    
T  40056605 acccatatat 40056614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 592 - 704
Target Start/End: Original strand, 14044266 - 14044378
Alignment:
Q  592 caaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgag 691  Q
    |||| |||||||||||| |  || |||||||||||||| || ||||| ||||| |  || |||||||||||||||| |||||||  ||||| |||||||     
T  14044266 caaaaagtctcatacttgagagaaagatgttaatgtgtcaagtgtgatttaaagttccatattggatgcaatagtaaatgttgaacaacatttaagtgat 14044365  T
Q  692 atgactcatatat 704  Q
    ||||| |||||||    
T  14044366 atgacccatatat 14044378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 566 - 689
Target Start/End: Complemental strand, 19817525 - 19817404
Alignment:
Q  566 tggtttttggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatag 665  Q
    |||||| ||||||| |||| || |  || |||||||| ||||| | ||||| |||||||||||| || || |||||||| |  ||||||||||| || ||    
T  19817525 tggtttatggtggtagatctcatatgcagagagtctcgtacttgagggagaaatgttaatgtgtcaagtgcgagttaaagt--cacattggatgtaagag 19817428  T
Q  666 tagatgttgagaaacatataagtg 689  Q
    ||||||||||| ||||||||||||    
T  19817427 tagatgttgagtaacatataagtg 19817404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 595 - 703
Target Start/End: Complemental strand, 32970556 - 32970448
Alignment:
Q  595 agagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagatg 694  Q
    ||||||||| | || | ||||| |||||||| ||| |||||||||| ||| |  |||||| ||||||| |||||||| ||| ||| ||||||||||||||    
T  32970556 agagtctcacatttcagggagatatgttaatatgtcaaatgtgagtgaaagtttcacattagatgcaagagtagatgctgaaaaatatataagtgagatg 32970457  T
Q  695 actcatata 703  Q
    || ||||||    
T  32970456 acccatata 32970448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 618 - 696
Target Start/End: Original strand, 20779566 - 20779644
Alignment:
Q  618 atgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagatgac 696  Q
    |||||||||||| ||||||||||||| || | ||| |||||| || ||||||| ||||  |||||||||||||||||||    
T  20779566 atgttaatgtgtcaaatgtgagttaacattatacactggatggaagagtagattttgaacaacatataagtgagatgac 20779644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 614 - 721
Target Start/End: Complemental strand, 34849896 - 34849788
Alignment:
Q  614 agagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagatgactcatatatataat-tct 712  Q
    |||||||||||||||| | |||||| ||||| |  ||||||| || |||| ||||||| |||| || ||||||||||||| ||| || || ||||| |||    
T  34849896 agagatgttaatgtgtcatatgtgaattaaagtttcacattgaattcaatggtagatggtgaggaaaatataagtgagataacttatgtacataatgtct 34849797  T
Q  713 taagatttt 721  Q
    |||||||||    
T  34849796 taagatttt 34849788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 414 - 513
Target Start/End: Complemental strand, 6088126 - 6088027
Alignment:
Q  414 tacttaagtcttaaaattttgaatgaaaatgtaacatcattctcacttgtgtgattgctctttctgcaatgcgtcgattcacacaagtgttggctcccca 513  Q
    |||||||  |||||||||||| ||||| |||| | || |||||||||||  ||| |||||||||| ||||| |||||| ||||  |||||| ||||||||    
T  6088126 tacttaaaccttaaaattttggatgaagatgtgatataattctcacttgaatgagtgctctttctccaatgtgtcgatccacatcagtgtttgctcccca 6088027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 592 - 703
Target Start/End: Complemental strand, 25225428 - 25225317
Alignment:
Q  592 caaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgag 691  Q
    |||| ||||| | |||||| |||| ||||||||| ||| |  ||||||||||| |  ||||||| ||||||||||||||| ||| ||| ||| ||||| |    
T  25225428 caaaaagtctaacacttaagggagggatgttaatatgtcatttgtgagttaaagttccacattgaatgcaatagtagatggtgaaaaagatacaagtgtg 25225329  T
Q  692 atgactcatata 703  Q
    ||||| ||||||    
T  25225328 atgacccatata 25225317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 649 - 704
Target Start/End: Complemental strand, 30171227 - 30171172
Alignment:
Q  649 cacattggatgcaatagtagatgttgagaaacatataagtgagatgactcatatat 704  Q
    ||||||||||||||||||| |||||||  || |||||||||| |||||||||||||    
T  30171227 cacattggatgcaatagtaaatgttgaacaatatataagtgatatgactcatatat 30171172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 613 - 696
Target Start/End: Complemental strand, 37837609 - 37837526
Alignment:
Q  613 gagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagatgac 696  Q
    |||| ||||||||||||||  ||||| ||||| | | || ||||||| || ||||||| ||||||||||||||| |||||||||    
T  37837609 gagatatgttaatgtgttatgtgtgatttaaacttatacgttggatgaaaaagtagatattgagaaacatataaatgagatgac 37837526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 665 - 726
Target Start/End: Original strand, 10020165 - 10020227
Alignment:
Q  665 gtagatgttgagaaacatataagtgagatgactcatatatataat-tcttaagattttgggtg 726  Q
    |||||| ||||  ||||||||||||||||||||||||||  |||| |||||||||||||||||    
T  10020165 gtagattttgaacaacatataagtgagatgactcatatacttaatatcttaagattttgggtg 10020227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 266 - 406
Target Start/End: Complemental strand, 12125979 - 12125841
Alignment:
Q  266 aactagtatggacacccgtgccaaacacgggttagaatttcgtcattttcaatggagagaatattgtgatgtatcaagtgtcacttaaatatcaacattg 365  Q
    ||||||||||||||||||||||||||| | | || |||||||||||  | |||  |||||  |||  |||| | ||| |||||||||||    |||||||    
T  12125979 aactagtatggacacccgtgccaaacatgagctaaaatttcgtcatacttaat--agagataattcagatggaacaaatgtcacttaaagtcgaacattg 12125882  T
Q  366 gataagatattggaggttgaagaacaaataagtgaaaaata 406  Q
    ||||| | | || |||||||| ||||||||||| |||||||    
T  12125881 gataaaagagtgcaggttgaacaacaaataagtaaaaaata 12125841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 607 - 655
Target Start/End: Original strand, 6435915 - 6435963
Alignment:
Q  607 ttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattg 655  Q
    |||||||||||||||||||||||| ||||| |||||||||  |||||||    
T  6435915 ttaatggagagatgttaatgtgttcaatgtaagttaaaatttcacattg 6435963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 594 - 693
Target Start/End: Original strand, 9263468 - 9263565
Alignment:
Q  594 aagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagat 693  Q
    |||||||||| |||||  ||||||||||||| |||| || ||||| | ||| |  || |||||||||||  |||||| |||| |||||||||||||||||    
T  9263468 aagagtctcacacttatgggagagatgttaaagtgtcaattgtgactcaaagttccaaattggatgcaa--gtagatcttgaaaaacatataagtgagat 9263565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 594 - 727
Target Start/End: Complemental strand, 14249371 - 14249239
Alignment:
Q  594 aagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagat 693  Q
    |||||||||| |||||  ||||| ||||||| |||| || ||||| ||||| |  |||| | |||||||  ||||||  ||| |||||||||||||||||    
T  14249371 aagagtctcacacttatgggagatatgttaaagtgtcaattgtgacttaaagttccacaatagatgcaa--gtagattatgaaaaacatataagtgagat 14249274  T
Q  694 gactcatatatataattc-ttaagattttgggtga 727  Q
    |||  ||||| ||||| | ||||| ||||||||||    
T  14249273 gaccaatatacataatactttaaggttttgggtga 14249239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 649 - 704
Target Start/End: Original strand, 20788479 - 20788534
Alignment:
Q  649 cacattggatgcaatagtagatgttgagaaacatataagtgagatgactcatatat 704  Q
    |||||||||| |||||||| |||||||  || |||||||||| |||||||||||||    
T  20788479 cacattggattcaatagtaaatgttgaacaatatataagtgatatgactcatatat 20788534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 542 - 625
Target Start/End: Original strand, 21320393 - 21320476
Alignment:
Q  542 ttcaacatttttggggagcataagtggtttttggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaat 625  Q
    ||||||||| | ||||||||| |||||||||||||||||||||  | ||| | |||||   | |||||||||| ||||||||||    
T  21320393 ttcaacattgtgggggagcatgagtggtttttggtggtggatcatacacagagagagttcaacacttaatggatagatgttaat 21320476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 594 - 695
Target Start/End: Original strand, 6437545 - 6437644
Alignment:
Q  594 aagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagat 693  Q
    |||||||||| |||||  ||||| ||||||| |||| || ||||| | ||| |  || |||||||||||  |||||| |||| |||||||||||||||||    
T  6437545 aagagtctcacacttatgggagatatgttaaagtgtcaattgtgactcaaagttccaaattggatgcaa--gtagatcttgaaaaacatataagtgagat 6437642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 594 - 644
Target Start/End: Complemental strand, 11655484 - 11655434
Alignment:
Q  594 aagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaa 644  Q
    |||||||| | |||||||||||||||||||| || | ||||||||||||||    
T  11655484 aagagtctgacacttaatggagagatgttaacgtatcaaatgtgagttaaa 11655434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 406 - 440
Target Start/End: Complemental strand, 20935289 - 20935255
Alignment:
Q  406 aaatcatgtacttaagtcttaaaattttgaatgaa 440  Q
    ||||||||||||||||||||||||||||| |||||    
T  20935289 aaatcatgtacttaagtcttaaaattttggatgaa 20935255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 661 - 703
Target Start/End: Original strand, 40417868 - 40417910
Alignment:
Q  661 aatagtagatgttgagaaacatataagtgagatgactcatata 703  Q
    ||||||||||| |||||||||||||||||||||| | ||||||    
T  40417868 aatagtagatggtgagaaacatataagtgagatggcccatata 40417910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 607 - 668
Target Start/End: Original strand, 9261465 - 9261526
Alignment:
Q  607 ttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtag 668  Q
    |||||||||||||||||||||||| | ||| | |||||||  ||||||| |||||| |||||    
T  9261465 ttaatggagagatgttaatgtgttcagtgtaacttaaaatttcacattgtatgcaagagtag 9261526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 608 - 677
Target Start/End: Complemental strand, 12125648 - 12125579
Alignment:
Q  608 taatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgaga 677  Q
    ||||| ||||||| |||||||| ||||| ||||||||||  ||||||  ||| || ||||||||||||||    
T  12125648 taatgcagagatgataatgtgtcaaatgcgagttaaaatttcacattttatgtaaaagtagatgttgaga 12125579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 99; Significance: 2e-48; HSPs: 2)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 489 - 746
Target Start/End: Complemental strand, 50422 - 50164
Alignment:
Q  489 gattcacacaagtgttggctccccataagttccaatggtgatatcatatccgcttcaacatttttggggagcataagtggtttttggtggtggatcgcag 588  Q
    ||||||||||||||||||||| | | |||| | |||  ||||||||||||||||||||| ||||| ||||||| ||||||||  | |||||||||||| |    
T  50422 gattcacacaagtgttggctctcgaaaagtcctaataatgatatcatatccgcttcaacgttttttgggagcagaagtggttcgtagtggtggatcgcgg 50323  T
Q  589 acacaaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagt 688  Q
    ||| | |||||||| |||||||||||||||  ||||| ||| || ||| |||||||||||||| ||| |||||||||||||||| ||  |||||||||      
T  50322 acatagagagtctcgtacttaatggagagaatttaatatgtcaagtgtcagttaaaataacacgttgaatgcaatagtagatgtagaacaacatataacc 50223  T
Q  689 gagatgactcatatatataat-tcttaagattttgggtgaaattgtgatgtccatctca 746  Q
    ||||| ||||| ||||  ||| ||| |||| |||||||||| |||||||||| ||||||    
T  50222 gagataactcaaatatcaaatgtctcaagaatttgggtgaagttgtgatgtcaatctca 50164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 326 - 451
Target Start/End: Complemental strand, 50558 - 50440
Alignment:
Q  326 atattgtgatgtatcaagtgtcacttaaatatcaacattggataagatattggaggttgaagaacaaataagtgaaaaataaatcatgtacttaagtctt 425  Q
    ||||| |||||||| |||||| | |||||| || ||||||||||| ||||||||||||  |||| |||||||||||||| || ||||       ||||||    
T  50558 atattatgatgtattaagtgtgagttaaatctccacattggataaaatattggaggttagagaataaataagtgaaaaaaaactcat-------agtctt 50466  T
Q  426 aaaattttgaatgaaaatgtaacatc 451  Q
    ||||||||| ||||| ||||||||||    
T  50465 aaaattttggatgaagatgtaacatc 50440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 84; Significance: 2e-39; HSPs: 3)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 414 - 560
Target Start/End: Original strand, 14333 - 14480
Alignment:
Q  414 tacttaagtcttaaaattttgaatgaaaatgtaacatcattctcacttgtgtgattgctctttctgcaatgcgtcgattcacacaagtgttggctcc-cc 512  Q
    |||||||  |||||||||||| ||||| ||||||||| | |||||||||||||||||| |||||| ||||| || |||||||||||||||||||||| ||    
T  14333 tacttaaaccttaaaattttggatgaagatgtaacattagtctcacttgtgtgattgccctttcttcaatgtgttgattcacacaagtgttggctcctcc 14432  T
Q  513 ataagttccaatggtgatatcatatccgcttcaacatttttggggagc 560  Q
    ||||||   ||||||||||||||||||||||||||||||||| |||||    
T  14433 ataagtcttaatggtgatatcatatccgcttcaacatttttgaggagc 14480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 634 - 748
Target Start/End: Original strand, 14532 - 14647
Alignment:
Q  634 tgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagatgactcatatatataat-tcttaagattttgggtgaaattg 732  Q
    |||||||||||||||||||||| |||||||||||||||||||  ||||||||| |||||||||||| |||| |||| ||||||||||||||||||| |||    
T  14532 tgtgagttaaaataacacattgaatgcaatagtagatgttgaacaacatataaatgagatgactcacatatttaatgtcttaagattttgggtgaagttg 14631  T
Q  733 tgatgtccatctcatt 748  Q
    ||||||| ||||||||    
T  14632 tgatgtcaatctcatt 14647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 14235 - 14307
Alignment:
Q  269 tagtatggacacccgtgccaaacacgggttagaatttcgtcattttcaatggagagaatattgtgatgtatca 341  Q
    |||||||||||||||||||||| ||||| ||||||||||||| | || | |||||||||||||||||||||||    
T  14235 tagtatggacacccgtgccaaatacgggctagaatttcgtcagtatcgagggagagaatattgtgatgtatca 14307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 6e-36; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 267 - 472
Target Start/End: Complemental strand, 15721643 - 15721438
Alignment:
Q  267 actagtatggacacccgtgccaaacacgggttagaatttcgtcattttcaatggagagaatattgtgatgtatcaagtgtcacttaaatatcaacattgg 366  Q
    ||||| |||||||| |||||||| ||| || ||||||||||||||  | || |||||||||||||| | |||| || |||   |||||| |||| |||||    
T  15721643 actagcatggacactcgtgccaagcacaggctagaatttcgtcatccttaagggagagaatattgtaaagtattaaatgtatgttaaatctcaatattgg 15721544  T
Q  367 ataagatattggaggttgaagaacaaataagtgaaaaataaatcatgtacttaagtcttaaaattttgaatgaaaatgtaacatcattctcacttgtgtg 466  Q
    |||| ||||||||||||||| |  |||||||||||||  || |||| |||||||| ||| |||||||| ||||| ||||||||||||| ||||| |||||    
T  15721543 ataaaatattggaggttgaatagtaaataagtgaaaataaactcatatacttaagactttaaattttggatgaagatgtaacatcattatcactcgtgtg 15721444  T
Q  467 attgct 472  Q
    ||||||    
T  15721443 attgct 15721438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 605 - 709
Target Start/End: Original strand, 43989681 - 43989784
Alignment:
Q  605 acttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagatgactcatatat 704  Q
    ||||||| ||||||||||||||||| || |||||||||||||   | |||| ||||||||||||||| |||||||||| |||||||||||| |||||||     
T  43989681 acttaattgagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtagatg-tgagaaacatttaagtgagatgattcatatac 43989779  T
Q  705 ataat 709  Q
    |||||    
T  43989780 ataat 43989784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 542 - 677
Target Start/End: Complemental strand, 17510369 - 17510234
Alignment:
Q  542 ttcaacatttttggggagcataagtggtttttggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagtt 641  Q
    ||||||||||| ||||||    ||||||| |||||||| |||| ||| |||||||||||| | ||||| ||||||||||||||||||| |||| ||||||    
T  17510369 ttcaacattttaggggagtgggagtggttcttggtggtcgatcacaggcacaaagagtctgacacttactggagagatgttaatgtgtcaaatttgagtt 17510270  T
Q  642 aaaataacacattggatgcaatagtagatgttgaga 677  Q
    ||| |  ||||||  ||| || ||||||||||||||    
T  17510269 aaagtttcacattttatgtaagagtagatgttgaga 17510234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 542 - 677
Target Start/End: Original strand, 17542845 - 17542980
Alignment:
Q  542 ttcaacatttttggggagcataagtggtttttggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagtt 641  Q
    ||||||||||| ||||||    ||||||| |||||||| |||| ||| |||||||||||| | ||||| ||||||||||||||||||| |||| ||||||    
T  17542845 ttcaacattttaggggagtgggagtggttcttggtggtcgatcacaggcacaaagagtctgacacttactggagagatgttaatgtgtcaaatttgagtt 17542944  T
Q  642 aaaataacacattggatgcaatagtagatgttgaga 677  Q
    ||| |  ||||||  ||| || ||||||||||||||    
T  17542945 aaagtttcacattttatgtaagagtagatgttgaga 17542980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 264 - 464
Target Start/End: Complemental strand, 6679652 - 6679453
Alignment:
Q  264 ataactagtatggacacccgtgccaaacacgggttagaatttcgtcattttcaatggagagaatattgtgatgtatcaagtgtcacttaaatatcaacat 363  Q
    |||||||||||||||| | |||||||||||||| ||||||||| ||||| |  | |||||||||||| |||||||| ||| || | |||||  | |||||    
T  6679652 ataactagtatggacatctgtgccaaacacgggctagaatttcatcattgttgagggagagaatattatgatgtattaagagttagttaaagctaaacat 6679553  T
Q  364 tggataagatattggaggttgaagaacaaataagt-gaaaaataaatcatgtacttaagtcttaaaattttgaatgaaaatgtaacatcattctcacttg 462  Q
    | ||||| | |  |||||||||  ||||||||||| |||||| ||||||||  ||||||  ||| ||||| | ||||| |||||  |||||| |||||||    
T  6679552 ttgataaaacagcggaggttgattaacaaataagtggaaaaaaaaatcatg--cttaagcattacaatttgggatgaagatgtagtatcattttcacttg 6679455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 595 - 693
Target Start/End: Original strand, 45406686 - 45406784
Alignment:
Q  595 agagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagat 693  Q
    |||||||||||||||||||||| |||||||||||| || |||||||||||||   ||||| |||| || || |||||||||||||||||| || |||||    
T  45406686 agagtctcatacttaatggagaaatgttaatgtgtcaattgtgagttaaaatttgacatttgatgtaagaggagatgttgagaaacatatgagggagat 45406784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 564 - 677
Target Start/End: Complemental strand, 17474863 - 17474750
Alignment:
Q  564 agtggtttttggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaat 663  Q
    ||||||| |||||||| |||| ||| |||||||||||| | ||||| ||||||||||||||||||| |||| ||||||||| |  ||||||  ||| ||     
T  17474863 agtggttcttggtggtcgatcacaggcacaaagagtctgacacttactggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaag 17474764  T
Q  664 agtagatgttgaga 677  Q
    ||||||||||||||    
T  17474763 agtagatgttgaga 17474750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 564 - 677
Target Start/End: Original strand, 17578351 - 17578464
Alignment:
Q  564 agtggtttttggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaat 663  Q
    ||||||| |||||||| |||| ||| |||||||||||| | ||||| ||||||||||||||||||| |||| ||||||||| |  ||||||  ||| ||     
T  17578351 agtggttcttggtggtcgatcacaggcacaaagagtctgacacttactggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaag 17578450  T
Q  664 agtagatgttgaga 677  Q
    ||||||||||||||    
T  17578451 agtagatgttgaga 17578464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 574 - 670
Target Start/End: Complemental strand, 38789060 - 38788964
Alignment:
Q  574 ggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagat 670  Q
    ||||||||||| || ||||  ||||||| | |||||||||||||||||||||||||||| ||| |||||||||  ||||||| |||||| |||||||    
T  38789060 ggtggtggatcacaaacacggagagtctgacacttaatggagagatgttaatgtgttaagtgtaagttaaaatttcacattgtatgcaagagtagat 38788964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 554 - 691
Target Start/End: Complemental strand, 4120143 - 4120006
Alignment:
Q  554 ggggagcataagtggtttttggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacat 653  Q
    ||||||||  ||||||| || ||||| || | || || |||| | ||||| |||||||||||||||  ||| |||| || ||| |||||||||  |||||    
T  4120143 ggggagcaagagtggttcttagtggtagaccacaaacgcaaacactctcacacttaatggagagatactaacgtgtcaagtgttagttaaaatttcacat 4120044  T
Q  654 tggatgcaatagtagatgttgagaaacatataagtgag 691  Q
    ||||| ||| ||| ||||||||| ||||||||||||||    
T  4120043 tggattcaaaagtggatgttgagcaacatataagtgag 4120006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 267 - 342
Target Start/End: Complemental strand, 29502556 - 29502481
Alignment:
Q  267 actagtatggacacccgtgccaaacacgggttagaatttcgtcattttcaatggagagaatattgtgatgtatcaa 342  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||  | || ||| |  |||||||||||||||||    
T  29502556 actagtatggacacccgtgccaagcacgggctagaatttcgtcatacttaagggaaatgatattgtgatgtatcaa 29502481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 606 - 684
Target Start/End: Complemental strand, 42080952 - 42080874
Alignment:
Q  606 cttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatat 684  Q
    |||||||||||||| ||||||||| |   ||||||||||||   ||||| ||||||| |||||||||||||||||||||    
T  42080952 cttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtagatgttgagaaacatat 42080874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 566 - 689
Target Start/End: Original strand, 29912542 - 29912663
Alignment:
Q  566 tggtttttggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatag 665  Q
    |||||| ||||||| |||| || |  || |||||||| ||||| |  |||| ||||||||| || || ||||||||||| |  ||||||||||| || ||    
T  29912542 tggtttatggtggtagatctcatatgcagagagtctcgtacttgagagagaaatgttaatgcgtcaagtgtgagttaaagt--cacattggatgtaagag 29912639  T
Q  666 tagatgttgagaaacatataagtg 689  Q
    ||||||||||| ||||||||||||    
T  29912640 tagatgttgagtaacatataagtg 29912663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 595 - 688
Target Start/End: Original strand, 20181327 - 20181420
Alignment:
Q  595 agagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagt 688  Q
    |||||||||||||||| |||||||||||||||  | |||||||| ||||| |   | ||||||| ||| ||||||| |||| ||||||| ||||    
T  20181327 agagtctcatacttaaaggagagatgttaatgcatcaaatgtgatttaaagttctatattggattcaagagtagatattgaaaaacatacaagt 20181420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 621 - 709
Target Start/End: Original strand, 22528920 - 22529008
Alignment:
Q  621 ttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagatgactcatatatataat 709  Q
    ||||| |||||  |||||||||||||   |||||| |||||| |||| |||||||||||||||||| ||| ||||| | ||||| ||||    
T  22528920 ttaatatgttatgtgtgagttaaaattttacattgtatgcaagagtaaatgttgagaaacatataactgatatgacccgtatatttaat 22529008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 265 - 311
Target Start/End: Complemental strand, 17475059 - 17475013
Alignment:
Q  265 taactagtatggacacccgtgccaaacacgggttagaatttcgtcat 311  Q
    ||||||| ||||||||||||||||| |||||| |||||||| |||||    
T  17475059 taactagcatggacacccgtgccaagcacgggctagaattttgtcat 17475013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 265 - 311
Target Start/End: Original strand, 17578155 - 17578201
Alignment:
Q  265 taactagtatggacacccgtgccaaacacgggttagaatttcgtcat 311  Q
    ||||||| ||||||||||||||||| |||||| |||||||| |||||    
T  17578155 taactagcatggacacccgtgccaagcacgggctagaattttgtcat 17578201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216 (Bit Score: 51; Significance: 8e-20; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 593 - 695
Target Start/End: Complemental strand, 29270 - 29168
Alignment:
Q  593 aaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgaga 692  Q
    ||||||||||| | |||| ||||| |||||||||| | |||||||||||||| |  |||||||||||||| |||||||||| |  |||||||||||||||    
T  29270 aaagagtctcacagttaagggagatatgttaatgtatcaaatgtgagttaaagttccacattggatgcaaaagtagatgttaaacaacatataagtgaga 29171  T
Q  693 tga 695  Q
    |||    
T  29170 tga 29168  T

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Target: scaffold1750 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold1750
Description:

Target: scaffold1750; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 605 - 709
Target Start/End: Complemental strand, 371 - 268
Alignment:
Q  605 acttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagatgactcatatat 704  Q
    ||||||||||||||||||||||||  || |||||||||||||   | |||| ||||||||||||||| |||||||||| |||| |||||||||| ||||     
T  371 acttaatggagagatgttaatgtggcaagtgtgagttaaaattttatattgtatgcaatagtagatg-tgagaaacatttaagcgagatgactcgtatac 273  T
Q  705 ataat 709  Q
    |||||    
T  272 ataat 268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1345 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold1345
Description:

Target: scaffold1345; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 605 - 701
Target Start/End: Original strand, 1847 - 1942
Alignment:
Q  605 acttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagatgactcata 701  Q
    ||||||| ||||||||||||||||| || |||||||||||||   | |||| ||||||||||||||| |||||||||| |||||||||| |||||||    
T  1847 acttaattgagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtagatg-tgagaaacatttaagtgagataactcata 1942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 295 - 473
Target Start/End: Original strand, 1988 - 2162
Alignment:
Q  295 ggttagaatttcgtcattttcaatggagagaatattgtgatgtatcaagtgtcacttaaatatcaacattggataagatattggaggttgaagaacaaat 394  Q
    ||||||||||| ||||||||| | | ||||||||| ||||| |||||||||||| |||||   ||||||||||| | | | ||||||||||| ||||| |    
T  1988 ggttagaatttagtcattttcga-gaagagaatatcgtgatttatcaagtgtcagttaaagtgcaacattggattaaagaatggaggttgaacaacaatt 2086  T
Q  395 aagtgaaaaataaatcatgtacttaagtcttaaaattttgaatgaaaatgtaacatcattctcacttgtgtgattgctc 473  Q
    ||||||||   || | || | |||||   ||||||||||| |||||||| | | ||||||||||||| |||||||||||    
T  2087 aagtgaaa---aacttatatgcttaaactttaaaattttggatgaaaatatgatatcattctcacttatgtgattgctc 2162  T

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Target: scaffold0169; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 606 - 701
Target Start/End: Original strand, 2278 - 2376
Alignment:
Q  606 cttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgc---aatagtagatgttgagaaacatataagtgagatgactcata 701  Q
    ||||||| ||| |||||||||||| || ||| |||||||||  ||||||||||||   | || ||||||||||| |||||| || |||||||| |||||    
T  2278 cttaatgaagatatgttaatgtgtcaagtgtaagttaaaattccacattggatgcaggagtaatagatgttgagcaacatacaaatgagatgattcata 2376  T

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Target: scaffold0114 (Bit Score: 48; Significance: 5e-18; HSPs: 2)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 264 - 355
Target Start/End: Original strand, 34470 - 34561
Alignment:
Q  264 ataactagtatggacacccgtgccaaacacgggttagaatttcgtcattttcaatggagagaatattgtgatgtatcaagtgtcacttaaat 355  Q
    |||||||||||||||||||||| ||| |||||| ||||||||||||||  |  ||||||| |||||| ||||||||| ||||||| ||||||    
T  34470 ataactagtatggacacccgtgtcaagcacgggctagaatttcgtcatagttgatggagacaatattatgatgtatctagtgtcagttaaat 34561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 614 - 703
Target Start/End: Original strand, 37041 - 37130
Alignment:
Q  614 agagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagatgactcatata 703  Q
    |||||||||||||||| || |||||||||||||   | | |||||  || ||||||| ||||  |||||||||||||||||| |||||||    
T  37041 agagatgttaatgtgtcaagtgtgagttaaaattctatagtggatagaagagtagattttgaataacatataagtgagatgattcatata 37130  T

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Target: scaffold0284 (Bit Score: 45; Significance: 3e-16; HSPs: 4)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 592 - 696
Target Start/End: Complemental strand, 6528 - 6424
Alignment:
Q  592 caaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgag 691  Q
    |||||| ||||| | |||| |||||| ||||||||| | |||||||||||||| |  || ||||||||||| | ||||||||||  ||||||||||||||    
T  6528 caaagattctcacaattaagggagaggtgttaatgtatcaaatgtgagttaaagttccatattggatgcaaaaatagatgttgaacaacatataagtgag 6429  T
Q  692 atgac 696  Q
    |||||    
T  6428 atgac 6424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 267 - 355
Target Start/End: Complemental strand, 3086 - 2998
Alignment:
Q  267 actagtatggacacccgtgccaaacacgggttagaatttcgtcattttcaatggagagaatattgtgatgtatcaagtgtcacttaaat 355  Q
    ||||||||||||||||||||||| |||||| |||||||||||||   |  | | ||| |||||| ||||||||| ||||||| ||||||    
T  3086 actagtatggacacccgtgccaagcacgggctagaatttcgtcaaagttgaggtagacaatattatgatgtatctagtgtcagttaaat 2998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 618 - 696
Target Start/End: Complemental strand, 7668 - 7590
Alignment:
Q  618 atgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagatgac 696  Q
    |||||||||||| ||||| |||||||  | | |||||||||| || ||||||| ||||| ||||||||||| |||||||    
T  7668 atgttaatgtgtcaaatgcgagttaacgttatacattggatggaagagtagattttgagcaacatataagttagatgac 7590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 654 - 695
Target Start/End: Complemental strand, 2372 - 2331
Alignment:
Q  654 tggatgcaatagtagatgttgagaaacatataagtgagatga 695  Q
    ||||||||| |||| ||||| |||||||||||||||||||||    
T  2372 tggatgcaaaagtaaatgttaagaaacatataagtgagatga 2331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 558 - 689
Target Start/End: Complemental strand, 31152 - 31023
Alignment:
Q  558 agcataagtggtttttggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattgga 657  Q
    ||||||| |||||| ||||||| |||| || |  || |||||||| ||||| | ||||| |||||||||||| || || |||||||| |  |||||||||    
T  31152 agcataattggtttatggtggtagatctcatatgcagagagtctcgtacttgagggagaaatgttaatgtgtcaagtgcgagttaaagt--cacattgga 31055  T
Q  658 tgcaatagtagatgttgagaaacatataagtg 689  Q
    || || ||||||||||||| ||||||||||||    
T  31054 tgtaagagtagatgttgagtaacatataagtg 31023  T

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Target: scaffold0191 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 595 - 686
Target Start/End: Original strand, 5143 - 5233
Alignment:
Q  595 agagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataa 686  Q
    ||||||| | ||||||||||||||||||||||| |||| ||| |||||||||  ||||||| |||||| |||||||| |||| |||||||||    
T  5143 agagtctgacacttaatggagagatgttaatgttttaagtgtaagttaaaatttcacattgtatgcaagagtagatg-tgagcaacatataa 5233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 332 - 510
Target Start/End: Complemental strand, 22929 - 22749
Alignment:
Q  332 tgatgtatcaagtgtcacttaaatatcaacattggataagatattggaggttgaagaacaaataagtgaaaaataaa--tcatgtacttaagtcttaaaa 429  Q
    ||||||||||||||||| |||||| | || ||||||||| | | ||||| ||||| | || ||||||| |||| |||  |||| ||||||    |||| |    
T  22929 tgatgtatcaagtgtcaattaaatttaaatattggataaaagagtggagattgaacatcacataagtggaaaaaaaaactcatatacttacactttaaca 22830  T
Q  430 ttttgaatgaaaatgtaacatcattctcacttgtgtgattgctctttctgcaatgcgtcgattcacacaagtgttggctcc 510  Q
    ||||| ||||| |  ||| ||| ||||||||||| ||||| |||||||| |||||  ||||||||||| | ||||||||||    
T  22829 ttttggatgaagacataaaatctttctcacttgtttgattactctttctccaatgtatcgattcacaccactgttggctcc 22749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 572 - 684
Target Start/End: Original strand, 30999 - 31107
Alignment:
Q  572 ttggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatg 671  Q
    |||||| |||||| ||||||| |||||||||    ||||||||||||| ||||| ||| |   ||||||||||||   ||||| ||||||| ||||||||    
T  30999 ttggtgatggatcacagacacgaagagtctc----ttaatggagagatattaatttgtcagtcgtgagttaaaatttgacattagatgcaagagtagatg 31094  T
Q  672 ttgagaaacatat 684  Q
    |||||||||||||    
T  31095 ttgagaaacatat 31107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0268 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 558 - 689
Target Start/End: Complemental strand, 19991 - 19862
Alignment:
Q  558 agcataagtggtttttggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattgga 657  Q
    ||||||| |||||| ||||||| |||| || |  || |||||||| ||||| | ||||| |||||||||||| || || || ||||| |  |||||||||    
T  19991 agcataattggtttatggtggtagatctcatatgcagagagtctcgtacttgagggagaaatgttaatgtgtcaagtgcgaattaaagt--cacattgga 19894  T
Q  658 tgcaatagtagatgttgagaaacatataagtg 689  Q
    || || ||||||| ||||| ||||||||||||    
T  19893 tgtaagagtagatattgagtaacatataagtg 19862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 595 - 689
Target Start/End: Original strand, 40575 - 40667
Alignment:
Q  595 agagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtg 689  Q
    |||||||| ||||| | ||||| ||||||| |||| |||||||||||||| |  ||||||||||| || | ||||||||||| || |||||||||    
T  40575 agagtctcgtacttgagggagaaatgttaacgtgtcaaatgtgagttaaagt--cacattggatgtaagaatagatgttgagtaagatataagtg 40667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 614 - 728
Target Start/End: Original strand, 12572 - 12687
Alignment:
Q  614 agagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagatgactcatatatataat-tct 712  Q
    |||||||||||||| | || | ||||||||| | | |||||||||| ||||||| || ||||  ||||||||||||||||||| | ||||  | ||  ||    
T  12572 agagatgttaatgtatgaagtttgagttaaagttatacattggatggaatagtatattttgaacaacatataagtgagatgacacgtatacctgatacct 12671  T
Q  713 taagattttgggtgaa 728  Q
    ||||||||||||||||    
T  12672 taagattttgggtgaa 12687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 273 - 344
Target Start/End: Complemental strand, 129430 - 129359
Alignment:
Q  273 atggacacccgtgccaaacacgggttagaatttcgtcattttcaatggagagaatattgtgatgtatcaagt 344  Q
    ||||||||||||||||| ||| || || ||||||||||| ||  |  |||||||||||||||||||||||||    
T  129430 atggacacccgtgccaagcactggctaaaatttcgtcatatttgagcgagagaatattgtgatgtatcaagt 129359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 266 - 311
Target Start/End: Complemental strand, 12007 - 11962
Alignment:
Q  266 aactagtatggacacccgtgccaaacacgggttagaatttcgtcat 311  Q
    |||||||||||||||||||||||| |||||| ||||| ||||||||    
T  12007 aactagtatggacacccgtgccaagcacgggctagaaattcgtcat 11962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 564 - 728
Target Start/End: Complemental strand, 47288 - 47123
Alignment:
Q  564 agtggtttttggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaat 663  Q
    ||||||| || |||||||||| |  ||||| ||||||| | | || || |||| |||||  ||| | || ||||||||||| |  ||| ||| ||| |||    
T  47288 agtggttatttgtggtggatcacttacacagagagtctaacatttgatagagaaatgttgttgtatcaagtgtgagttaaagtttcacgttgtatggaat 47189  T
Q  664 agtagatgttgagaaacatataagtgagatgactcatatatataat-tcttaagattttgggtgaa 728  Q
    ||||||||||||  ||||||||||||||||||| || |||  | || |||||||| ||||||||||    
T  47188 agtagatgttgaacaacatataagtgagatgacacacatacctcatgtcttaagactttgggtgaa 47123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1315 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold1315
Description:

Target: scaffold1315; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 606 - 746
Target Start/End: Original strand, 510 - 652
Alignment:
Q  606 cttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggat--gcaatagtagatgttgagaaacatataagtgagatgactcatata 703  Q
    |||||| ||||||||||||||||| |  ||| ||| ||| |   |||||||||  |||| ||||||||||||||||||||| || ||||| | |||||||    
T  510 cttaatagagagatgttaatgtgtcagttgtaagtaaaagttcaacattggatatgcaagagtagatgttgagaaacatatgagggagatta-tcatata 608  T
Q  704 tataat-tcttaagattttgggtgaaattgtgatgtccatctca 746  Q
      |||| ||||| || |||||||||||  |||||||| ||||||    
T  609 cctaatgtcttaggactttgggtgaaaaagtgatgtcgatctca 652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1293 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold1293
Description:

Target: scaffold1293; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 606 - 746
Target Start/End: Complemental strand, 1561 - 1419
Alignment:
Q  606 cttaatggagagatgttaatgtgttaaatgtgagttaaaataacacattggat--gcaatagtagatgttgagaaacatataagtgagatgactcatata 703  Q
    |||||| ||||||||||||||||| |  ||| ||| ||| |   |||||||||  |||| ||||||||||||||||||||| || ||||| | |||||||    
T  1561 cttaatagagagatgttaatgtgtcagttgtaagtaaaagttcaacattggatatgcaagagtagatgttgagaaacatatgagggagatta-tcatata 1463  T
Q  704 tataat-tcttaagattttgggtgaaattgtgatgtccatctca 746  Q
      |||| ||||| || |||||||||||  |||||||| ||||||    
T  1462 cctaatgtcttaggactttgggtgaaaaagtgatgtcgatctca 1419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1737 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold1737
Description:

Target: scaffold1737; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 606 - 644
Target Start/End: Original strand, 524 - 562
Alignment:
Q  606 cttaatggagagatgttaatgtgttaaatgtgagttaaa 644  Q
    ||||| |||||||||||||||||| ||||||||||||||    
T  524 cttaagggagagatgttaatgtgtcaaatgtgagttaaa 562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1590 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold1590
Description:

Target: scaffold1590; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 269 - 346
Target Start/End: Original strand, 1450 - 1525
Alignment:
Q  269 tagtatggacacccgtgccaaacacgggttagaatttcgtcattttcaatggagagaatattgtgatgtatcaagtgt 346  Q
    ||||||||||||||||| ||| ||| |  || ||||||||||| ||  |  |||||||||||||||||||||||||||    
T  1450 tagtatggacacccgtgacaagcacagactaaaatttcgtcatatttga--gagagaatattgtgatgtatcaagtgt 1525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 614 - 703
Target Start/End: Complemental strand, 18538 - 18449
Alignment:
Q  614 agagatgttaatgtgttaaatgtgagttaaaataacacattggatgcaatagtagatgttgagaaacatataagtgagatgactcatata 703  Q
    ||||||||||||  || || |||||||||||||   | | |||||  || ||||||| ||||  ||||||||||||||||||||||||||    
T  18538 agagatgttaattagtcaagtgtgagttaaaattctatagtggatagaagagtagattttgaataacatataagtgagatgactcatata 18449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 650 - 703
Target Start/End: Original strand, 32745 - 32798
Alignment:
Q  650 acattggatgcaatagtagatgttgagaaacatataagtgagatgactcatata 703  Q
    ||||| ||||||| || | ||||| ||||||||||||||||||||||| |||||    
T  32745 acattagatgcaagagcatatgttaagaaacatataagtgagatgactgatata 32798  T

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