View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10301_1D_low_30 (Length: 212)
Name: NF10301_1D_low_30
Description: NF10301_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10301_1D_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 5e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 16 - 202
Target Start/End: Complemental strand, 46240079 - 46239893
Alignment:
| Q |
16 |
atcaacagtgatactcaccctgtttccaggacacactcttttaagttcagcagcatatctccttatcattgagtattgacaatcagcatcaccctcaaca |
115 |
Q |
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| T |
46240079 |
atcaacattgatactcacactatttccaggacacactcttttaagttcagcagcatatctccttatcattgagtattgacaatcagcatcaccctcaaca |
46239980 |
T |
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| Q |
116 |
attttctgagctatctgttttgctttccacgccctacctttggtgatacccactgcatgattcgtcctcatgtcatccatgatgtcc |
202 |
Q |
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| T |
46239979 |
attttctgagctatctgtttagctttccacgccctacctttggtgatacccactgcatgattcgtcctcatgtcatccatgatgtcc |
46239893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 53 - 194
Target Start/End: Complemental strand, 23541436 - 23541295
Alignment:
| Q |
53 |
cttttaagttcagcagcatatctccttatcattgagtattgacaatcagcatcaccctcaacaattttctgagctatctgttttgctttccacgccctac |
152 |
Q |
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||||||||||| |||||||| |||| ||||| | ||||| | |||||||||||| |||||||| ||||||| ||||||||||| ||||| ||||||| |
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| T |
23541436 |
cttttaagttctgcagcatacctccaaatcatggcatattgcctatcagcatcaccatcaacaatactctgagcaatctgttttgccttccaagccctac |
23541337 |
T |
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| Q |
153 |
ctttggtgatacccactgcatgattcgtcctcatgtcatcca |
194 |
Q |
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| T |
23541336 |
ccattgtaatacccactgcatggtttgtcctcatgtcatcca |
23541295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 134; Significance: 6e-70; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 16 - 202
Target Start/End: Original strand, 3437400 - 3437574
Alignment:
| Q |
16 |
atcaacagtgatactcaccctgtttccaggacacactcttttaagttcagcagcatatctccttatcattgagtattgacaatcagcatcaccctcaaca |
115 |
Q |
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||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3437400 |
atcaacattgatactcacactgtttccaggacacactcttttaagttcagcagcatatctccttatcattgagtattgacaatcagcatcaccctcaaca |
3437499 |
T |
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| Q |
116 |
attttctgagctatctgttttgctttccacgccctacctttggtgatacccactgcatgattcgtcctcatgtcatccatgatgtcc |
202 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3437500 |
attttctgagctatctgttttgctttccacgccc------------tacccactgcatgattcgtcctcatgtcatcgatgatgtcc |
3437574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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