View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10301_1D_low_36 (Length: 202)
Name: NF10301_1D_low_36
Description: NF10301_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10301_1D_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 20694931 - 20695105
Alignment:
| Q |
18 |
cgaaaactgcaaaattcgcacaggaaaggctgccaaaagcgcaccagcgcctaggccatgcgcccatatgcctcactctatgcgccttgcatatgagcac |
117 |
Q |
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| T |
20694931 |
cgaaaactgcaaaattcgcacaggaaaggctgccaaaagcgcaccagcgcccaggccatgcgcccatatgcctcactctatgcgccttgcatatgagcac |
20695030 |
T |
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| Q |
118 |
ggccagggagtgttggttgcttggtttttaagcttttttagtggaaaacctctagctacccgtaagtaatgatgt |
192 |
Q |
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| T |
20695031 |
ggccagggagtgttggttgcttggtttttaagcttttttagtggaaaacctctagctacccgtaagtaatgatgt |
20695105 |
T |
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Target: chr4 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 92 - 165
Target Start/End: Original strand, 18444631 - 18444705
Alignment:
| Q |
92 |
actctatgcgccttgcatatgagcacggccagggagtgttggttgcttggtttttaagct-tttttagtggaaaa |
165 |
Q |
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| T |
18444631 |
actctacgtgccttgcacatgagcacggccaggaaatgttggttgcttggtttttaagctgtttttagtggaaaa |
18444705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 87 - 172
Target Start/End: Original strand, 29292168 - 29292254
Alignment:
| Q |
87 |
gcctcactctatgcgccttgcatatgagcacggccagggagtgttggttgcttggtttttaagct-tttttagtggaaaacctctag |
172 |
Q |
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| T |
29292168 |
gcctcactctattcgccctacacatgagcatagccaaggagtgttggttacttggtttttaagctgtttttagtggaaaacccctag |
29292254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 167
Target Start/End: Complemental strand, 14745172 - 14745113
Alignment:
| Q |
110 |
atgagcacggccagggagtgttggttgcttggtttttaagc--ttttttagtggaaaacc |
167 |
Q |
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| T |
14745172 |
atgagcacggtcagtgagtactagttgcttggtttttaagctattttttagtggaaaacc |
14745113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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