View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10301_1D_low_6 (Length: 353)
Name: NF10301_1D_low_6
Description: NF10301_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10301_1D_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 23 - 332
Target Start/End: Original strand, 42348929 - 42349238
Alignment:
| Q |
23 |
accaagacggttctacctacgcggttttgttacctcttttggaaggagatttcagggctgttcttcaggggaatgatcaaaatgaaattgagatttgtgt |
122 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42348929 |
accaagatggttctacctacgcggttttgttacctcttttggaaggagatttcagggctgttcttcaggggaatgatcaaaatgaaattgagatttgtgt |
42349028 |
T |
|
| Q |
123 |
cgaaagtggtatgcactcttcataaatttgttaatgttttttgtgtgtgtaaaccatgtatcctccacacataaatgtagaaactaaaccgtcgagttgc |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42349029 |
cgaaagtggtatgcactcttcataaatttgttaatgttttttgtgtgtgtaaaccatgtatcctccacacataaatgtagaaactaaaccgtcgagttgc |
42349128 |
T |
|
| Q |
223 |
gtaggatcacagtgcgcagagtagtgtatgttaggtatgcattgtgattttttgccatgtgcatgattgtaggatgtcctgatgtggaggaatttgatgg |
322 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42349129 |
gtaggatcacagtgcgcagagtagtgtatgttaggtatgcattgtgattttttgctatgtgcatgattgtaggatgtcctgatgtggaggaatttgatgg |
42349228 |
T |
|
| Q |
323 |
gactcatttg |
332 |
Q |
| |
|
|||||||||| |
|
|
| T |
42349229 |
gactcatttg |
42349238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 19057201 - 19057310
Alignment:
| Q |
25 |
caagacggttctacctacgcggttttgttacctcttttggaaggagatttcagggctgttcttcaggggaatgatcaaaatgaaattgagatttgtgtcg |
124 |
Q |
| |
|
||||| ||||||||||||| |||||||||||| ||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
19057201 |
caagatggttctacctacgtggttttgttaccacttctggaaggagatttcagggctgctcttcagggg---------aatgaaattgagatttgtgtcg |
19057291 |
T |
|
| Q |
125 |
aaagtggtatgcactcttc |
143 |
Q |
| |
|
||||||||||| ||||||| |
|
|
| T |
19057292 |
aaagtggtatgtactcttc |
19057310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 286 - 332
Target Start/End: Original strand, 19057447 - 19057493
Alignment:
| Q |
286 |
tgattgtaggatgtcctgatgtggaggaatttgatgggactcatttg |
332 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19057447 |
tgattgtaggatgtcctgatgtggaggaatttgatgggactcatttg |
19057493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 25 - 143
Target Start/End: Complemental strand, 50804987 - 50804878
Alignment:
| Q |
25 |
caagacggttctacctacgcggttttgttacctcttttggaaggagatttcagggctgttcttcaggggaatgatcaaaatgaaattgagatttgtgtcg |
124 |
Q |
| |
|
||||| ||||||||||||| |||||||||||| ||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||| | |
|
|
| T |
50804987 |
caagatggttctacctacgtggttttgttaccacttctggaaggagatttcagggctgctcttcagggga---------atgaaattgagatttgtgttg |
50804897 |
T |
|
| Q |
125 |
aaagtggtatgcactcttc |
143 |
Q |
| |
|
||||||||||| ||||||| |
|
|
| T |
50804896 |
aaagtggtatgtactcttc |
50804878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 50870890 - 50870999
Alignment:
| Q |
25 |
caagacggttctacctacgcggttttgttacctcttttggaaggagatttcagggctgttcttcaggggaatgatcaaaatgaaattgagatttgtgtcg |
124 |
Q |
| |
|
||||| ||||||||||||| |||||||||||| ||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||| | |
|
|
| T |
50870890 |
caagatggttctacctacgtggttttgttaccacttctggaaggagatttcagggctgctcttcagggg---------aatgaaattgagatttgtgttg |
50870980 |
T |
|
| Q |
125 |
aaagtggtatgcactcttc |
143 |
Q |
| |
|
||||||||||| ||||||| |
|
|
| T |
50870981 |
aaagtggtatgtactcttc |
50870999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 332
Target Start/End: Complemental strand, 50804742 - 50804692
Alignment:
| Q |
285 |
atgattgtaggatgtcctgatg---tggaggaatttgatgggactcatttg |
332 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
50804742 |
atgattgtaggatgtcctgatgatgtggagcaatttgatgggactcatttg |
50804692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 332
Target Start/End: Original strand, 50871135 - 50871185
Alignment:
| Q |
285 |
atgattgtaggatgtcctgatg---tggaggaatttgatgggactcatttg |
332 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
50871135 |
atgattgtaggatgtcctgatgatgtggagcaatttgatgggactcatttg |
50871185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University