View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10301_1D_low_7 (Length: 340)
Name: NF10301_1D_low_7
Description: NF10301_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10301_1D_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 131; Significance: 6e-68; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 25 - 203
Target Start/End: Complemental strand, 22199037 - 22198859
Alignment:
| Q |
25 |
gttatgaccaatgatatgttcaatttccttccaaaattgtttgctccacacatcattaaaaaagagaacataccgttttttgttcaagtgttttttcact |
124 |
Q |
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| T |
22199037 |
gttatgaccaatgatatgttcaatttccttccaaaattgttttttccacacatcattaaagaagagaacataccgttttttgtgcaagtgttttttcact |
22198938 |
T |
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| Q |
125 |
ctatttgtcaacagctctagatccatcttataaaagagataggtagccaagttccttcgcaaagcttctgcaacatgaa |
203 |
Q |
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| T |
22198937 |
ctaactttcaacggctctagatccatcttataaaagccataggtagcccagttccttcgcaaagcttctacaacatgaa |
22198859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 228 - 334
Target Start/End: Complemental strand, 22198799 - 22198693
Alignment:
| Q |
228 |
actttccaatcacgttctcgttgtcgtaaatttgcttgacaagagtggtttttccctgacctgccattcctaccacgactgtaacattgatctttggatg |
327 |
Q |
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||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||| ||| |
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| T |
22198799 |
actttccaatcaccttctcgttgtcataaatttgcttgacaagagtggtttttccctgtcctgtcattcctaccacgactgtaacattgctctttgcatg |
22198700 |
T |
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| Q |
328 |
tccatct |
334 |
Q |
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||||||| |
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| T |
22198699 |
tccatct |
22198693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 228 - 334
Target Start/End: Complemental strand, 22196042 - 22195936
Alignment:
| Q |
228 |
actttccaatcacgttctcgttgtcgtaaatttgcttgacaagagtggtttttccctgacctgccattcctaccacgactgtaacattgatctttggatg |
327 |
Q |
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||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||| ||| |
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| T |
22196042 |
acttttcaatcaccttctcgttgtcgtaaatttgcttgacaagagtggtttttccctgtcctaccattcctaccacgactgtaacattgctctttgcatg |
22195943 |
T |
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| Q |
328 |
tccatct |
334 |
Q |
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| T |
22195942 |
ttcatct |
22195936 |
T |
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