View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10301_1D_low_9 (Length: 302)

Name: NF10301_1D_low_9
Description: NF10301_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10301_1D_low_9
NF10301_1D_low_9
[»] chr1 (1 HSPs)
chr1 (6-297)||(26218791-26219079)


Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 6 - 297
Target Start/End: Original strand, 26218791 - 26219079
Alignment:
Q  6 gtgttctatgtgcgggcgagattgaagataattatcttcatcttttcttttggtgcgacaatgcagaacaagtttgaaggcttttgagtgttgggatatc 105  Q
    ||||||||||||||||||||||||||||||||   |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  26218791 gtgttctatgtgcgggcgagattgaagataat---cttcatcttttcttatggtgcgacaatgcagaacaagtttgaagtcttttgagtgttgggatatc 26218887  T
Q  106 atccaacttcatcaatagcaacatacaaacctcccaaatattatagcatctatcatacaggcttctaatggcttacaacccgcaactttcatgattctga 205  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26218888 atccaacttcatcaacagcaacatacaaacctcccaaatattatagcatctatcatacaggcttctaatggcttacaacccgcaactttcatgattctga 26218987  T
Q  206 tgtggagcatttggtaaaaacgaaacattaaagtttggtgcaacatcattgaacttgctcaggtgaaatgggaccgagctaccagactgttg 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26218988 tgtggagcatttggtaaaaacgaaacattaaagtttggtgcaacatcattgaacttgctcaggtgaaatgggaccgagctaccagactgttg 26219079  T

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