View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10301_2D_high_12 (Length: 303)
Name: NF10301_2D_high_12
Description: NF10301_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10301_2D_high_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 11 - 287
Target Start/End: Original strand, 45916741 - 45917017
Alignment:
| Q |
11 |
gaagcatggagtatgtgcgaagtaaataaaaatacttacgggccaaccaatccaacactgtgagtgaggttcccattctgcaggcatgtgaaagccatga |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45916741 |
gaagcatggagtatgtgcgaagtaaataaaaatacttacgggccaaccaatccaacactgtgagtgaggttcccattctgcaggcatgtgaaagccatga |
45916840 |
T |
|
| Q |
111 |
aaagtaggtgtgttttctagatgcatcatgcaatattctcactctctgattttgctctgttcttcacaatcgtttctgtttcattgagggaaaataacga |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45916841 |
aaagtaggtgtgttttctagatgcatcatgcaatattctcactctctgattttgctctgttcttcacaatcgtttctgtttcattgagggaaaataacga |
45916940 |
T |
|
| Q |
211 |
agatgttgtaaataaataaataaacaaacatgtaatatgcatgagtttgtttaattaagaagattgaatgaaaataa |
287 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45916941 |
agatggtgtaaataaataaataaacaaacatgtaatatgcatgagtttgtttaattaagaagattgaatgaaaataa |
45917017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 42 - 110
Target Start/End: Original strand, 45910042 - 45910110
Alignment:
| Q |
42 |
atacttacgggccaaccaatccaacactgtgagtgaggttcccattctgcaggcatgtgaaagccatga |
110 |
Q |
| |
|
||||||||||| ||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
45910042 |
atacttacgggacaacccatccaacactgagagtgaggttcccattctgaaggcatgtgaaagccatga |
45910110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University