View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10301_2D_high_2 (Length: 827)
Name: NF10301_2D_high_2
Description: NF10301_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10301_2D_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 380
Target Start/End: Original strand, 3518346 - 3518706
Alignment:
| Q |
18 |
gaactattaaagtgttgtatttgtatgcagaaaacgcacattcttgacgagggtccttatctctaatcattttgatgctctaattgtaggagctatccaa |
117 |
Q |
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| T |
3518346 |
gaactatcaaagtgttgtatttgtatgcagaaaacgcacattcttgacgagggtccttatctctaatcattttgatgctctaattgtaggaactatccaa |
3518445 |
T |
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| Q |
118 |
ggaatcacatttttcagaatatgaaaaataaggacaaggtcatagagaggccggggactagtggatctagagatccaacactgcttctctgtttcacttc |
217 |
Q |
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| T |
3518446 |
ggaatcacatttttcagaatataaaaaataaggacaaggtcatagagaggtcggggactagtggatttaga--tccaacactgcttctccgtttcacttc |
3518543 |
T |
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| Q |
218 |
catgctctcaacttaatgtgactcctaggattgagcttgcgaccatcgttctgccgcctattcctttaccgaaaagaggtcatgaagtttctttgacatc |
317 |
Q |
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| T |
3518544 |
catgctctcaacttaatgtgactcccaggattgagcttgcgaccatcgttctgccgcctactcctttaccgaaaagaggtcatgaagtttctttgacatc |
3518643 |
T |
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| Q |
318 |
ctaaactcaaggtggataaaagaattagttggccagtctaacttggcggttggcaccggggac |
380 |
Q |
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| T |
3518644 |
ctaaactcaaggtggataaaagaattagttggccagtctaacttggcggttggcaccggggac |
3518706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 432 - 805
Target Start/End: Original strand, 3518712 - 3519080
Alignment:
| Q |
432 |
tgcctattatttgggctgccctcctccaatcttggagaggactatggagatcatcccccatgtcgaaatcaataatttgaccaacctaggccctgttggt |
531 |
Q |
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| T |
3518712 |
tgcctattatttgggctgccctcctccaatcttggagaggactatggagatcatccctcatgtcgaaatcaataatttgaccaatctaggccctgttggt |
3518811 |
T |
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| Q |
532 |
cagaggataccttccttgaaaacttttctgtacactatactcttaacaattccatgcaactgagcagtacttcatgagctacgataaggtctatcatgga |
631 |
Q |
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| T |
3518812 |
cagaggataccttcgttgaaaacttttctgtacactatactct-aacaattccatgcaactgagcagtagttcatgagctacgataaggtctatcatgga |
3518910 |
T |
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| Q |
632 |
caagcatcttaagttattaagaaactcaaccaattcaattgattaatcttcaaatttataaatgtctatcgggatcatcatcatttcaaattattttggc |
731 |
Q |
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| T |
3518911 |
caagcatctt----tattaagaaactcaaccaattcaattgattaatcttcaaatttataaatgtccatcgggatcatcatcatttcaaattattttggc |
3519006 |
T |
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| Q |
732 |
atttgctattttgatcacattgtggtagaaaaattcccggctaaaacatcaggtttatagttcagacatattat |
805 |
Q |
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| T |
3519007 |
atttgctactttgatcacattgtggtagaaaaattcccggctaaaacatcaggcatatagttcagacacattat |
3519080 |
T |
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