View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10301_2D_high_21 (Length: 265)
Name: NF10301_2D_high_21
Description: NF10301_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10301_2D_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 13 - 252
Target Start/End: Original strand, 31719719 - 31719958
Alignment:
| Q |
13 |
acactattgttaaaaatattagatggttactcaaacatttggagacataccattttgtcctactggctacctcataaagcttgaggcaaagcaagaaatt |
112 |
Q |
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| T |
31719719 |
acactattgttaaaaatattagatggttactcaaacatttggagacataccattttgtcctactggctacctcataaagcttgaggcaaaacaagaaatt |
31719818 |
T |
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| Q |
113 |
catgagatgaatatagacgtttaattgctgctattcatgctgggaagcctaaagattgaatagaggaatgtctcaaagtggaacctgataaagtgagatg |
212 |
Q |
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| T |
31719819 |
catgagatgaatatagacgtttaattgctgctattcatgctgggaagcctaaagattgaatagaggaatgtctcaaagtggaacctgataaagtgagatg |
31719918 |
T |
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| Q |
213 |
tctaagtttaagtcccacaccgttcaatagtgttgtaaat |
252 |
Q |
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| T |
31719919 |
tctaagtttaagtcccacaccgttcaacagtgttgtaaat |
31719958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 141 - 225
Target Start/End: Complemental strand, 31011773 - 31011689
Alignment:
| Q |
141 |
tgctattcatgctgggaagcctaaagattgaatagaggaatgtctcaaagtggaacctgataaagtgagatgtctaagtttaagt |
225 |
Q |
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| T |
31011773 |
tgctattcatgctgggaagcctaaaggtggaatagtggaatgtctcaaagtggagcctgataaagtgagacgtctaagtttaagt |
31011689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 141 - 225
Target Start/End: Original strand, 31709549 - 31709633
Alignment:
| Q |
141 |
tgctattcatgctgggaagcctaaagattgaatagaggaatgtctcaaagtggaacctgataaagtgagatgtctaagtttaagt |
225 |
Q |
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| T |
31709549 |
tgctatacatgctgggaagcctaaaggtggaatagtggaatgtctcaaagtggagcctgataaagtgagacgtctaagtttaagt |
31709633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 31012221 - 31012172
Alignment:
| Q |
26 |
aaatattagatggttactcaaacatttggagacataccattttgtcctac |
75 |
Q |
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| T |
31012221 |
aaattttagatggttactcaaacatttggagacatactgttttgtcctac |
31012172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 31709112 - 31709156
Alignment:
| Q |
31 |
ttagatggttactcaaacatttggagacataccattttgtcctac |
75 |
Q |
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| T |
31709112 |
ttagatggttactcaaacatttggagacatactgttttgtcctac |
31709156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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