View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10301_2D_high_4 (Length: 561)
Name: NF10301_2D_high_4
Description: NF10301_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10301_2D_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 1 - 547
Target Start/End: Complemental strand, 14929580 - 14929039
Alignment:
| Q |
1 |
ctaacaaaaattccaac---ccaagaaatacacataaatttggtcactattgagtaccaagtagtatctttcattttatatagtcatatactacattttc |
97 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
14929580 |
ctaacaaaaattccaacaacccaagaaatacacataaatttggtcactattgagtaccaagtagtatctttcattttatata--------ctacattttc |
14929489 |
T |
|
| Q |
98 |
ccctaaacatacccctcatttgactaaataacaagagttaagaaactggcagtcttttcaccaaaagcaaaaagaaacaactagtagactagatgggttc |
197 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14929488 |
ccctaaatatacccctcatttgactaaataacaagagttaagaaaccggcagtcttttcaccaaaagcaaaaagaaacaactagtagactagatgggttc |
14929389 |
T |
|
| Q |
198 |
tgtgacgtatgaaccatccactgcgttattacatatggtaaagattattttggccaactagttgatatctagtatctacatgttaaagtcagtagggtgg |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14929388 |
tgtgacgtatgaaccatccactgcgttattacatatggtaaagattattttggccaactagttgatatctagtatctacatgttaaagtcagtagggtgg |
14929289 |
T |
|
| Q |
298 |
gtctcatgcataagacgctgcttcttcttaggagtttcgtgcacttgtgcttcccttccaaatgtcttgagttgataatttgcaaaggcagcagaaacag |
397 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
14929288 |
gtctcatgcgtaagacgctgcttcttcttaggagtttcgtgcacttgtgcttcccttccaaatgtcttgagctgataatttgcaaaggcagcagaaacag |
14929189 |
T |
|
| Q |
398 |
cttccacctatgattatgtnnnnnnnntcagtacatgggcatagtgtgcatatattcaaaatttccaaattatgaaaatacttttttggttgttgtttct |
497 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14929188 |
cttccacctatgattatgtaaaaaaaatcagtgcatgggcatagtgtgcatatattcaaaatttccaaattatgaaaatacttttttggttgttgtttct |
14929089 |
T |
|
| Q |
498 |
ttgtcactaaccagttcaggcttcttgctgtacactctcactatgatgtc |
547 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14929088 |
ttgtcactaaccagttcaggcttcttgctgtacactctcactatgatgtc |
14929039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University