View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10301_2D_high_6 (Length: 415)
Name: NF10301_2D_high_6
Description: NF10301_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10301_2D_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 25814626 - 25814482
Alignment:
| Q |
18 |
gaagggctagtgcaagtgagattcattggctttcttgagaaagaatttcaacaagtaaaaaggtaggcgacacaaggtttagaaacaaataaattcttac |
117 |
Q |
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| T |
25814626 |
gaagggctagtgcaagtgagattcattggctttcttgagaaagaatttcaacaagtaaaaaggtaggcgacacaaggtttagaaacaaataaattcttac |
25814527 |
T |
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| Q |
118 |
gcaccctgaaattttgttgggtacatgtatttgtagacaaaactt |
162 |
Q |
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| T |
25814526 |
gcaccctgaaattttgttgggtacatgtatttgtagacaaaactt |
25814482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 305 - 397
Target Start/End: Complemental strand, 25814462 - 25814370
Alignment:
| Q |
305 |
taaaagcaaatattttttgaatggtgattttcttggagctcagtttaattgatcacaattcaagctatgtttgacatagtataaggtctacat |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
25814462 |
taaaagcaaatattttttgaatggtgattttcttggagctcagtttaattgatcacaattcaagctatgtttgacatactataaggtctacat |
25814370 |
T |
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