View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10301_2D_low_1 (Length: 1113)

Name: NF10301_2D_low_1
Description: NF10301_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10301_2D_low_1
NF10301_2D_low_1
[»] chr7 (8 HSPs)
chr7 (631-1053)||(18714925-18715337)
chr7 (313-622)||(18714633-18714942)
chr7 (1048-1096)||(25176527-25176575)
chr7 (81-165)||(18714527-18714609)
chr7 (794-864)||(25314032-25314102)
chr7 (801-851)||(21450970-21451020)
chr7 (794-847)||(25268807-25268860)
chr7 (766-819)||(33044013-33044066)
[»] chr5 (4 HSPs)
chr5 (794-865)||(41894406-41894477)
chr5 (793-851)||(6926328-6926386)
chr5 (804-851)||(39647142-39647189)
chr5 (799-864)||(2643865-2643930)
[»] chr8 (1 HSPs)
chr8 (799-865)||(33120561-33120627)
[»] chr1 (2 HSPs)
chr1 (795-887)||(6025946-6026041)
chr1 (794-849)||(4541569-4541624)
[»] chr6 (1 HSPs)
chr6 (798-853)||(24769302-24769357)
[»] chr4 (3 HSPs)
chr4 (807-866)||(47789165-47789224)
chr4 (796-853)||(2317026-2317083)
chr4 (804-865)||(50794573-50794634)


Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 631 - 1053
Target Start/End: Original strand, 18714925 - 18715337
Alignment:
Q  631 atgttttgtgttatttcacaatttttgatgcatgtaaatttggccatacatggagtaagtaagaagtatgtatttgttgttttatctattgtgagttgtc 730  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  18714925 atgttttgtgttatttcacaatttttgctgcatgtaaatttggccatacatggagtaagtaagaagtatgtatttgttgttttatctattgtgagttgtg 18715024  T
Q  731 gcatcaaatatagaaaatacttgaatcagttagagttgtcaaatagccgctatagtgctaatgtagcatagcagaatttgaacaaatcgtttttgttctg 830  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  18715025 gcatcaaatatagaaaatacttgaatcagttagtgttgtcaaatagccgctatagtgctaatatagcatagcagaatttgaacaaattgtttttgttctg 18715124  T
Q  831 aaatattctatttagtacaaagtgtcgttaaatagttatatcagcgctatagcactgctaagcgtaatttgaacaaactgttattttctgcaattcctgc 930  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  18715125 aaatattctatttagtacaaagtgtcgttaaatagttatatcagcgctatagcactgctaagcgtaatttgaacaaactactattttctgcaattcctgc 18715224  T
Q  931 ttgacaacactgacatcaattaatattttatacctctgatttttcttctcttgtctttgtctgtgacaactctgtgttgtgccatgacctacgcaaaagt 1030  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||| ||||||||          ||||||||||||||||    
T  18715225 ttgacaacactgacatcaattaatattttatacctctgattttttttctcatgtccttgtctgtggcaactctg----------tgacctacgcaaaagt 18715314  T
Q  1031 caagttaacatgtaagatcattt 1053  Q
    ||||||||||||| |||||||||    
T  18715315 caagttaacatgttagatcattt 18715337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 313 - 622
Target Start/End: Original strand, 18714633 - 18714942
Alignment:
Q  313 acttaggcttaaacacctatttggaatgatgaatcatgctctttgaaatactttccaatttgtttatattttcaaccactgtgcttaacataacttttgt 412  Q
    |||||||| |||| | ||||||||||||| ||||||||||||||||||||||| ||||| ||||| |||| |||||||||||||||||||||||||||||    
T  18714633 acttaggcataaagagctatttggaatgacgaatcatgctctttgaaatacttcccaatatgtttttattgtcaaccactgtgcttaacataacttttgt 18714732  T
Q  413 tgttattaatcattactggttatacttggttgctgttgttgtactcgttactgatcgatgatataaaatccaaccatgttttctcttcaccttgacnnnn 512  Q
    || |||||||||||||| |||||||||||||||||||||||| ||| |||||||| |||| |||| ||||||||||||||||||||||||||| ||        
T  18714733 tgctattaatcattactagttatacttggttgctgttgttgtgctcattactgattgatggtatacaatccaaccatgttttctcttcaccttaactctt 18714832  T
Q  513 nnnaatatcttgtctttctcacagctttatgaagatgacatgtgcctgtgcatattagatacaaatccgttgagtcatgggtaaggtatcatatgttttg 612  Q
       |||||||||||  ||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  18714833 tctaatatcttgtcactctaacagctttatgaagatgacatgtgcctgtgcatattggatacaaatccattgagtcatgggtaaggtatcatatgttttg 18714932  T
Q  613 tgttatttca 622  Q
    ||||||||||    
T  18714933 tgttatttca 18714942  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 1048 - 1096
Target Start/End: Original strand, 25176527 - 25176575
Alignment:
Q  1048 tcatttcctttacgtacttgaagtacagacacaaaaacatcaggaagaa 1096  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  25176527 tcatttcctttacgtacttgaagtccagacacaaaatcatcaggaagaa 25176575  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 165
Target Start/End: Original strand, 18714527 - 18714609
Alignment:
Q  81 agaggtgtcagaatccattttacatcaacttgttgggttgataataagataggaaacggtctcattg-atttatggttaaatgcat 165  Q
    ||||||||| | |||||||||||||||  |||| ||||||   ||||||||||||| ||||||||||  |||||||||||||||||    
T  18714527 agaggtgtcgggatccattttacatcagtttgtagggttg---ataagataggaaatggtctcattgcgtttatggttaaatgcat 18714609  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 794 - 864
Target Start/End: Complemental strand, 25314102 - 25314032
Alignment:
Q  794 tagcatagcagaatttgaacaaatcgtttttgttctgaaatattctatttagtacaaagtgtcgttaaata 864  Q
    ||||||||  |||||||||||||||||| ||||||||  |||  |||||| ||||||||||| ||||||||    
T  25314102 tagcatagaggaatttgaacaaatcgttattgttctgtgatacactatttggtacaaagtgttgttaaata 25314032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 801 - 851
Target Start/End: Complemental strand, 21451020 - 21450970
Alignment:
Q  801 gcagaatttgaacaaatcgtttttgttctgaaatattctatttagtacaaa 851  Q
    ||||||||||||||||||  | |||||||| ||||| ||||||||||||||    
T  21451020 gcagaatttgaacaaatcactattgttctggaatatgctatttagtacaaa 21450970  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 794 - 847
Target Start/End: Original strand, 25268807 - 25268860
Alignment:
Q  794 tagcatagcagaatttgaacaaatcgtttttgttctgaaatattctatttagta 847  Q
    |||| ||||||||||||||||||||||| ||||||||  |||  ||||||||||    
T  25268807 tagcgtagcagaatttgaacaaatcgttattgttctgctatacactatttagta 25268860  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 766 - 819
Target Start/End: Complemental strand, 33044066 - 33044013
Alignment:
Q  766 ttgtcaaatagccgctatagtgctaatgtagcatagcagaatttgaacaaatcg 819  Q
    |||||||||||| |||||||||  |   ||||||||||||||||||||||||||    
T  33044066 ttgtcaaatagcagctatagtgacacaatagcatagcagaatttgaacaaatcg 33044013  T

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Target: chr5 (Bit Score: 36; Significance: 0.0000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 794 - 865
Target Start/End: Original strand, 41894406 - 41894477
Alignment:
Q  794 tagcatagcagaatttgaacaaatcgtttttgttctgaaatattctatttagtacaaagtgtcgttaaatag 865  Q
    |||| ||||||||||||||||||| ||| |||||||| ||||  ||||||| |||||||||| || ||||||    
T  41894406 tagcctagcagaatttgaacaaattgttattgttctgcaatacgctatttactacaaagtgttgtcaaatag 41894477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 793 - 851
Target Start/End: Original strand, 6926328 - 6926386
Alignment:
Q  793 gtagcatagcagaatttgaacaaatcgtttttgttctgaaatattctatttagtacaaa 851  Q
    |||||||||||||||||||||||||| || | |||||  ||||| ||||||||||||||    
T  6926328 gtagcatagcagaatttgaacaaatcattatcgttctacaatatgctatttagtacaaa 6926386  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 804 - 851
Target Start/End: Complemental strand, 39647189 - 39647142
Alignment:
Q  804 gaatttgaacaaatcgtttttgttctgaaatattctatttagtacaaa 851  Q
    |||||||||||||||||| ||||||||  |||| ||||||||||||||    
T  39647189 gaatttgaacaaatcgttattgttctgcgatatgctatttagtacaaa 39647142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 799 - 864
Target Start/End: Original strand, 2643865 - 2643930
Alignment:
Q  799 tagcagaatttgaacaaatcgtttttgttctgaaatattctatttagtacaaagtgtcgttaaata 864  Q
    ||||| ||||||||||||||||| |||||||| ||||  ||||| ||||| |||||| || |||||    
T  2643865 tagcataatttgaacaaatcgttattgttctggaatacgctattaagtacgaagtgttgtcaaata 2643930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 799 - 865
Target Start/End: Complemental strand, 33120627 - 33120561
Alignment:
Q  799 tagcagaatttgaacaaatcgtttttgttctgaaatattctatttagtacaaagtgtcgttaaatag 865  Q
    |||| |||| ||||||||||||| |||||||| ||||| |||||||||||||| ||| || ||||||    
T  33120627 tagcggaatctgaacaaatcgttgttgttctgcaatatgctatttagtacaaaatgttgtcaaatag 33120561  T

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Target: chr1 (Bit Score: 34; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 795 - 887
Target Start/End: Complemental strand, 6026041 - 6025946
Alignment:
Q  795 agcatagcagaatttgaacaaatcgtttttgttctgaaatattctatttagtacaaagtgtcgttaaatagt---tatatcagcgctatagcactg 887  Q
    |||||||  |||||||||||||| ||| |||||| |  |||| |||||||||||||| ||| || |||||||   |||| ||||||||||||||||    
T  6026041 agcataggggaatttgaacaaatagttattgttccgcgatatgctatttagtacaaaatgttgtcaaatagtggctatagcagcgctatagcactg 6025946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 794 - 849
Target Start/End: Original strand, 4541569 - 4541624
Alignment:
Q  794 tagcatagcagaatttgaacaaatcgtttttgttctgaaatattctatttagtaca 849  Q
    ||||||||||||| |||||||||||||| ||||| || ||||| |||||| |||||    
T  4541569 tagcatagcagaacttgaacaaatcgttattgttttgcaatatgctatttggtaca 4541624  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 798 - 853
Target Start/End: Original strand, 24769302 - 24769357
Alignment:
Q  798 atagcagaatttgaacaaatcgtttttgttctgaaatattctatttagtacaaagt 853  Q
    ||||| ||||||||||||||| || |||||||| ||||  ||||||||||||||||    
T  24769302 atagcggaatttgaacaaatcattattgttctgcaatacactatttagtacaaagt 24769357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 807 - 866
Target Start/End: Original strand, 47789165 - 47789224
Alignment:
Q  807 tttgaacaaatcgtttttgttctgaaatattctatttagtacaaagtgtcgttaaatagt 866  Q
    ||||||||||||||| | |||||| |||| ||||||||||||||| ||| || |||||||    
T  47789165 tttgaacaaatcgttatcgttctgcaatactctatttagtacaaactgttgtcaaatagt 47789224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 796 - 853
Target Start/End: Complemental strand, 2317083 - 2317026
Alignment:
Q  796 gcatagcagaatttgaacaaatcgtttttgttctgaaatattctatttagtacaaagt 853  Q
    ||||||| ||||||||||||||||| |||||||||   ||| |||||||||| |||||    
T  2317083 gcatagcggaatttgaacaaatcgtgtttgttctgtgctatgctatttagtagaaagt 2317026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 804 - 865
Target Start/End: Original strand, 50794573 - 50794634
Alignment:
Q  804 gaatttgaacaaatcgtttttgttctgaaatattctatttagtacaaagtgtcgttaaatag 865  Q
    |||||||||||||||||  |||||||| | ||| ||| |||||||||||||| || ||||||    
T  50794573 gaatttgaacaaatcgtcattgttctgcactatgctagttagtacaaagtgttgtcaaatag 50794634  T

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