View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10301_2D_low_10 (Length: 527)
Name: NF10301_2D_low_10
Description: NF10301_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10301_2D_low_10 |
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| [»] chr4 (2 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 17 - 527
Target Start/End: Original strand, 365911 - 366425
Alignment:
| Q |
17 |
acatcaagcctcaaatgaatcataacggaatacaaacacnnnnnnntggtcatttgcttgaaaaattacaaagtttcaccttgcatatttgattaaatcg |
116 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
365911 |
acatcaagcctcaaatgaatcataacggaatacaaacaccaaaaaatggtcatttgcttgaaaaattacaaagtttcaccttgcatatttgattaaatcg |
366010 |
T |
|
| Q |
117 |
agaagtggctgtgcnnnnnnn-ttataactcaagagtatcatgactttatgtgtttcaattctgtaaccttctcaaaatccagaggatggaagtttcttt |
215 |
Q |
| |
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|||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
366011 |
gtaagtggttgtgcaaaaaaaattataactcaagagtatcatgactttatgtgtttcaattttgtaaccttctcaaaatccagaggatggaagtttcttt |
366110 |
T |
|
| Q |
216 |
ctacctcccaagccagttgttacatacaattaaatgtcgacttcgcaccnnnnnnncatcggtgacttctatagggaaatgaatgtggacctagaataag |
315 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
366111 |
ctacctcccaagccaactgttacatacaattaaatgtcgactttgcaccttttt--catcggtgacttctctagggaaatgaatgtggacctagaataag |
366208 |
T |
|
| Q |
316 |
ccgtagttaggagaaaacactcgcatatccaagcccaggcgatccacccatatcaacttagcttctgagtcctacaatgggaaatcaaatgcattaaaag |
415 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
366209 |
ccgtagttaggagaaaacagtcgcatatccaagcccaggcgatccacccatatcatcttagcttctgagtcctacaatgggaaatcaaatgcattaaaag |
366308 |
T |
|
| Q |
416 |
ttaacacaacaaaactaactta-----ccccaatattgttttgaagtcacgtttctatttagcagtcacatacatcaagtaatttctatctggatgttgc |
510 |
Q |
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| T |
366309 |
ttaacacaacaaaactaacttattggtccccaatattgttttgaagtcacgtttctatttagcagtcatatacatcaagtaatttctatctggatgttgc |
366408 |
T |
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| Q |
511 |
ataaaaacggttaaata |
527 |
Q |
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| T |
366409 |
ataaacacggttaaata |
366425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 17 - 495
Target Start/End: Complemental strand, 530311 - 529830
Alignment:
| Q |
17 |
acatcaagcctcaaatgaatcataacggaatacaaacacnnnnnnn-tggtcatttgcttgaaaaattacaaagtttcaccttgcatatttgattaaatc |
115 |
Q |
| |
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||||||||||||||||||||||| || |||||||||||| ||||||| | |||||||||| ||||||||||| |||||||||||||| |||| |
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| T |
530311 |
acatcaagcctcaaatgaatcatcacagaatacaaacacaataaaaatggtcatattcttgaaaaataacaaagtttcatcttgcatatttgatgaaatt |
530212 |
T |
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| Q |
116 |
gagaagtggctgtgcnnnnnnnttataactcaagagtatcatgactttatgtgtttcaattctgtaaccttctcaaaatccagaggatggaagtttcttt |
215 |
Q |
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| | | || ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
530211 |
ggtatgcggttgtgcaaaaaaattataactcaacagtatcatgactttatgtgtttcaattctgtaaccttctcaaaatccagaggatggaagtttcttt |
530112 |
T |
|
| Q |
216 |
ctacctcccaagccagttgttacatacaattaaatgtcgacttcgcaccnnnnnnncatcggtgacttctatagggaaatgaatgtggacctagaataag |
315 |
Q |
| |
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||||||||||||||| |||| ||||||| |||||||| ||||| ||||| |||| ||||||||| |||||||| ||||| | |||| ||||| |
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| T |
530111 |
ctacctcccaagccaattgtgacatacagttaaatgttgacttggcacc--tttttcatctgtgacttctctagggaaaggaatgcgaacctcaaataaa |
530014 |
T |
|
| Q |
316 |
ccgtagttaggagaaaacactcgcatatccaagcccaggcgatccacccatatcaacttagcttctgagtcctacaatgggaaatcaaatgcattaaaag |
415 |
Q |
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|||| |||||||||||||| |||||||| ||||||| ||||| |||||||||| ||| ||||||| | |||||||| ||||||||||| ||||| ||| |
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| T |
530013 |
ccgttgttaggagaaaacaaacgcatatctaagcccaaacgatctacccatatcacctttgcttctgtgacctacaat-ggaaatcaaatacattagaag |
529915 |
T |
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| Q |
416 |
ttaacacaacaaaactaactta-----ccccaatattgttttgaagtcacgtttctatttagcagtcacatacatcaagtaattt |
495 |
Q |
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|||||||| ||||||||||||| | ||| ||||||||||||| | |||||||||||||||||||||||| ||||| |||| |
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| T |
529914 |
ttaacacagcaaaactaacttatcggtactcaaaattgttttgaagttaggtttctatttagcagtcacatacagcaagtgattt |
529830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 17 - 527
Target Start/End: Complemental strand, 520644 - 520131
Alignment:
| Q |
17 |
acatcaagcctcaaatgaatcataacggaatacaaacacnnnnnnntggtcatttgcttgaaaaattacaaagtttcaccttgcatatttgattaaatcg |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||| | |
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| T |
520644 |
acatcaagcctcaaatgaatcataacggaatacaaacaccaaaaaatggtcatattcttgaaaaattacaaagtttcaccttgcatatttgattaaattg |
520545 |
T |
|
| Q |
117 |
agaagtggctgtgcnnnnnnnttataactcaagagtatcatgactttatgtgtttcaattctgtaaccttctcaaaatccagaggatggaagtttctttc |
216 |
Q |
| |
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|||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
520544 |
gtaagtggttgtgcaaaaaaattataactcatgagtatcatgactttatgtgtttcaattctgtaaccttctcaaaatactgaggatggaagtttctttc |
520445 |
T |
|
| Q |
217 |
tacctcccaagccagttgttacatacaattaaatgtcgacttcgcaccnnnnnnncatcggtgacttctatagggaaatgaatgtggacctagaataagc |
316 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
520444 |
tacctcccaagccaattgttacatacaattaaatgtcgacttcgcaccttttt--catcggtgacttctctaaggaaatgaatgtggacctagaataagc |
520347 |
T |
|
| Q |
317 |
cgtagttaggagaaaacactcgcatatccaagcccaggcgatccacccatatcaacttagcttctgagtcctacaatgggaaatcaaatgcattaaaagt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
520346 |
cgtagttaggagaaaacactcgcatatccaagcccaggcgatccacccatatcatcttagcttctgagtcctacaatgggaaaccaaatgcattaaaagt |
520247 |
T |
|
| Q |
417 |
taacacaacaaaactaactta-----ccccaatattgttttgaagtcacgtttctatttagcagtcacatacatcaagtaatttctatctggatgttgca |
511 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
520246 |
taacacaacaaaactaacttattggtccccaatattgttttgaagtcacgtttctatttagcagtcacatacatcaagtaatttctatctggatgttgca |
520147 |
T |
|
| Q |
512 |
taaaaacggttaaata |
527 |
Q |
| |
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|||| ||||||||||| |
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| T |
520146 |
taaacacggttaaata |
520131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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