View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10301_2D_low_11 (Length: 502)
Name: NF10301_2D_low_11
Description: NF10301_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10301_2D_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 20 - 485
Target Start/End: Original strand, 21606241 - 21606707
Alignment:
| Q |
20 |
attcccaccttttaccttcaaccctaatccaccctagggaactgtcaccctttgaccgaccctattccagccatcagcttgcctccgttatagaccgtgg |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
21606241 |
attcccaccttttaccttcaaccctaatccaccctaggcaactgtcaccctttgaccgaccctattccagccatcagcttgtctccgttatagatcgtgg |
21606340 |
T |
|
| Q |
120 |
ctcttgtgtcgtaaatatcactagagccactgtcaggttgtctcatacatgcattagatatgtctttgctcagccgtgaaagcgtggctttctatttcat |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
21606341 |
ctcttgtgtcgtaaatatcactagagccactgtcaggttgtctcatacatgcatttgatatgtctttgcttagccgtgaaagcgtggctttctatttcat |
21606440 |
T |
|
| Q |
220 |
gcagtcatgaaggttgccttgctctcccactcatagggaaggtaatgggcaggtaataaagcactcctcgtcccaacatctgcagcggaaaaacatttgt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21606441 |
gcagtcatgaaggttgccttgctctcccactcatagggaaggtaatgggcaggtaataaagcactcctcgtcccaacatctgcagcggaaaaacatttgt |
21606540 |
T |
|
| Q |
320 |
attcaaatccaacgtagattttatagttgtcgttgaagcggaatacaactgaacaatgttttgagtttggcagaatgttttattaggctgataagtttaa |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
21606541 |
attcaaatccaacgtagattttatagttgtcgttgaagcggaatacaaccgaacaatgttttgagtttggcagaatgttttattaggctgataaatttaa |
21606640 |
T |
|
| Q |
420 |
aattggctggataataataaatttacaataa-nnnnnnncaaagactaaaatatgtttcaaattttg |
485 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
21606641 |
aattggctggataataataaatttacaataattttttttcaaagactaaaatatgtttcaaattttg |
21606707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 20 - 485
Target Start/End: Original strand, 38030246 - 38030710
Alignment:
| Q |
20 |
attcccaccttttaccttcaaccctaatccaccctagggaactgtcaccctttgaccgaccctattccagccatcagcttgcctccgttatagaccgtgg |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
38030246 |
attcccaccttttaccttcaaccctaatccaccctaggcaactgtcacccattgaccgaccctattccagccatcagcttgccttcgttatagatcgtgg |
38030345 |
T |
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| Q |
120 |
ctcttgtgtcgtaaatatcactagagccactgtcaggttgtctcatacatgcattagatatgtctttgctcagccgtgaaagcgtggctttctatttcat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38030346 |
ctcttgtgtcgtaaatatcactagagccactgtcaggttgtctcatacatgcattagatatgtctttgctcagccgtgaaagcgtggctttctatttcat |
38030445 |
T |
|
| Q |
220 |
gcagtcatgaaggttgccttgctctcccactcatagggaaggtaatgggcaggtaataaagcactcctcgtcccaacatctgcagcggaaaaacatttgt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38030446 |
gcagtcatgaaggttgccttgctctcccactcatagggaaggtaatgggcaggtaataaagcactcctcgtcccaacatctgcagcggaaaaacatttgt |
38030545 |
T |
|
| Q |
320 |
attcaaatccaacgtagattttatagttgtcgttgaagcggaatacaactgaacaatgttttgagtttggcagaatgttttattaggctgataagtttaa |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
38030546 |
attcaaatccaacgtagattttatagttgtcgttgaagcggaatacaaccgaacaatg--ttgagtttggcagaatgttttattaggctgataaatttaa |
38030643 |
T |
|
| Q |
420 |
aattggctggataataataaatttacaataa-nnnnnnncaaagactaaaatatgtttcaaattttg |
485 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38030644 |
aattggctggataataataaatttacaataattttttttcaaagactaaaatatgtttcaaattttg |
38030710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 205 - 320
Target Start/End: Original strand, 38024011 - 38024121
Alignment:
| Q |
205 |
ggctttctatttcatgcagtcatgaaggttgccttgctctcccactcatagggaaggtaatgggcaggtaataaagcactcctcgtcccaacatctgcag |
304 |
Q |
| |
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||||||||||||||||||| ||| ||||||||||||||| ||| ||||| ||||||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
38024011 |
ggctttctatttcatgcagccatcaaggttgccttgctc--ccagtcataaggaaggtaatgggcaggtaataaagca---ctcgtcccaacatgtgcag |
38024105 |
T |
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| Q |
305 |
cggaaaaacatttgta |
320 |
Q |
| |
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|||||| ||||||| |
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|
| T |
38024106 |
ttgaaaaatatttgta |
38024121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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