View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10301_2D_low_12 (Length: 488)
Name: NF10301_2D_low_12
Description: NF10301_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10301_2D_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 207 - 471
Target Start/End: Complemental strand, 45678650 - 45678383
Alignment:
| Q |
207 |
acgtgtatgttctaatccttggagtatgttgcaattgattgattaagtggtcacagtggctacaaatctaaacgagtaatacttgcttgagcataaca-- |
304 |
Q |
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| T |
45678650 |
acgtgtatgttctgatccttggagtatgttgcaattgattgattaagtggtcacagtggctacaaatctaaacgagtaatacttgcttgagcataacagt |
45678551 |
T |
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| Q |
305 |
-ctaaatcatttgaaacatttacagtatatattgtcaaatgccaaatataattgtgatgatgatatatttcaaaaatacgagtttcactgggaagaggga |
403 |
Q |
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| T |
45678550 |
actaaatcatttgaaacatttacagtatatattgtcaaatgccaaatataatggtgatgatgatatatttcaaaaatacgagtttcactgggaagaggga |
45678451 |
T |
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| Q |
404 |
cagttttgtcaaaatagaaaataaaatgtacagttgtcacgtttgcatggagttttgtttctattatt |
471 |
Q |
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| T |
45678450 |
cagttttgtcaaaatagaaaataaaatgtacagttgtcacgtttgcatggagttttgtttctattatt |
45678383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 45678826 - 45678641
Alignment:
| Q |
1 |
aatcagtattttgagctttttagtgtggccaagttaaggcagggaaatataatatttttcagaaaactgtacatacacgagcccaaatattacggatcaa |
100 |
Q |
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| T |
45678826 |
aatcagtattttgagctttttagtgtggccaagttaaggcagggaaatataatatttttcagcaaactgtacatacacgagcccaaatattacggatcaa |
45678727 |
T |
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| Q |
101 |
agacagactcgaaagagttatgttcatctgaatgggacaagtacaacaacgtaaataggatatatacgtacatatgacgtggatgt |
186 |
Q |
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| T |
45678726 |
agacagactcgaaagagttatgttcatctgaatgggacaagtacaacaacgtaaataggatatatacgtacatatgacgtgtatgt |
45678641 |
T |
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