View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10301_2D_low_14 (Length: 416)
Name: NF10301_2D_low_14
Description: NF10301_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10301_2D_low_14 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 9 - 394
Target Start/End: Original strand, 18646681 - 18647066
Alignment:
| Q |
9 |
aatgacatcttcaactaaaaccttttatttagattataaagtgttgtttaacnnnnnnnnnnnnnnnnnnnnnnttgagaccaatgaacgacactaacac |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
18646681 |
aatgacatcttcaactaaaaccttttatttagattataaagtgttgtttaacaaaagagatgaaagagaaaaaattgagaccaatgaacgacactaacac |
18646780 |
T |
|
| Q |
109 |
ttggacactagtaataatttgagaaaatgataaaaatgaacttttatcacataatgtttgtgtaagacaccgacacactaacgtcacaaagatggagaag |
208 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18646781 |
ttggacattagtaataatttgagaaaatgataaaaatgaacgtttatcacacaatgtttgtgtaagacaccgacacactaacgtcacaaagatggagaag |
18646880 |
T |
|
| Q |
209 |
aagaaaatagagaaagaaagagtgaagggattactatacttactgttattgggtttgcgaacaaggccactgaaagtgaaggaacgtggttgatggttat |
308 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
18646881 |
aagaaaatagagaaagaaagagtggagggattactatacttactgttattgggtttgcgaacaaggccactgaaagtgaaggaacgtggttgacggttat |
18646980 |
T |
|
| Q |
309 |
gatgatcatggtgatgatgtggtaacttaaactccttcacattcagtttccatgatgatgaaggttcaactctcgcactttctccg |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
18646981 |
gatgatcatggtgatgatgtggtaacttaaactccttcacattcagtttccatgatgatgaaggttcaactctcacactttctccg |
18647066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 83 - 393
Target Start/End: Original strand, 18650001 - 18650310
Alignment:
| Q |
83 |
ttgagaccaatgaacgacactaacacttggacactagtaataatttgagaaaatgataaaaatgaacttttatcacataatgtttgtgtaagacaccgac |
182 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||| ||||| |||||||||| |
|
|
| T |
18650001 |
ttgagaccaatgaacgacactaacacttggacactagtaataatttgagaaaatgaaaaaaatgaacgtttatcacacaatgtctgtgtcagacaccgac |
18650100 |
T |
|
| Q |
183 |
acactaacgtcacaaagatggaga--------agaagaaaatagagaaagaaagagtgaagggattactatacttactgttattgggtttgcgaacaagg |
274 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18650101 |
acactaacgccacaaagatggagacattcagaagaagaaaatggagaaagaaagagtggagggattactatacttactgttattgggtttgcgaacaagg |
18650200 |
T |
|
| Q |
275 |
ccactgaaagtgaaggaacgtggttgatggttatgatgatcatggtgatgatgtggtaacttaaactccttcacattcagtttccatgatgatgaaggtt |
374 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18650201 |
ccactgaaagtgaaggaacgtggttgacggttatgatgatc---------atgtggtaagttaaactccttcacattcagtttccatgatgatgaaggtt |
18650291 |
T |
|
| Q |
375 |
caactctcgcactttctcc |
393 |
Q |
| |
|
||||| || |||||||||| |
|
|
| T |
18650292 |
caactatcacactttctcc |
18650310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 6 - 60
Target Start/End: Original strand, 18649924 - 18649978
Alignment:
| Q |
6 |
tgcaatgacatcttcaactaaaaccttttatttagattataaagtgttgtttaac |
60 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
18649924 |
tgcaaggacatcttcaactaaaaccttttattttgactataaagtgttgtttaac |
18649978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 35335587 - 35335627
Alignment:
| Q |
98 |
gacactaacacttggacactagtaataatttgagaaaatga |
138 |
Q |
| |
|
|||||| |||| | ||||||||||||||||||||||||||| |
|
|
| T |
35335587 |
gacactgacacatagacactagtaataatttgagaaaatga |
35335627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University