View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10301_2D_low_19 (Length: 395)
Name: NF10301_2D_low_19
Description: NF10301_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10301_2D_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 46528075 - 46528451
Alignment:
| Q |
1 |
ccctgtgattgacattgcagctcaaattttaggaaaagatgtgcactcaaagccattgtctgatgcagatcgcatcaaggtaagaaattcatatttctat |
100 |
Q |
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| T |
46528075 |
ccctgtgattgacattgcagctcaaattttaggaaaagatgtgcactcaaagccattgtcagatgcagatcgcatcaaggtaagaaattcatatttctat |
46528174 |
T |
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| Q |
101 |
ggcaactagaattctctgtttttagttggataacatcatctccaaaagttaagcactatccgagaaagaaatctttgtggtatcattcaagcagattaag |
200 |
Q |
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| T |
46528175 |
ggcaactagaattctctgtttttagttggataacatcatctccaaaaattaagcactatccgacaaagaaatctttgtggtatcactcaagcagattaag |
46528274 |
T |
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| Q |
201 |
aaagccttgaaaggtgtgaaagtagaagttacatatagaggaaggtttagaaggaagtacaggataacaggattaacatcacaacctacaagagaactca |
300 |
Q |
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| T |
46528275 |
aaagccttgaaaggtgtgaaagtagaagttacatatagaggaagttttagaaggaagtacaggataactggattaacatcacaacctacaagagaactca |
46528374 |
T |
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| Q |
301 |
ggtatggctttgtaattttttgcattacaaaaagttgtgaatttaacacattgtacatttgaggtaacggcttttta |
377 |
Q |
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| T |
46528375 |
ggtatggctttgtaattttttgcattacaaaaagttgtgaatttaacacattggacatttgaggtaacggcttttta |
46528451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 171; Significance: 1e-91; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 6 - 369
Target Start/End: Complemental strand, 43030386 - 43030031
Alignment:
| Q |
6 |
tgattgacattgcagctcaaattttaggaaaagatgtgcactcaaagccattgtctgatgcagatcgcatcaaggtaagaaattcatatttctatggcaa |
105 |
Q |
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| T |
43030386 |
tgattgacactgcagctcaaattttatgaaaacatgtgccctcaaagccattgtcaaatgcagaccg--------taagaaatttatttttctatggaaa |
43030295 |
T |
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| Q |
106 |
ctagaattctctgtttttagttggataacatcatctccaaaagttaagcactatccgagaaagaaatctttgtggtatcattcaagcagattaagaaagc |
205 |
Q |
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| T |
43030294 |
ctagaattttttgtttttagttcgataatatcatctttaaaagttaaacactatctgaccacgaaatctttgtggtatcattcatgcagattaagaaaga |
43030195 |
T |
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| Q |
206 |
cttgaaaggtgtgaaagtagaagttacatatagaggaaggtttagaaggaagtacaggataacaggattaacatcacaacctacaagaga--actcaggt |
303 |
Q |
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| T |
43030194 |
ctgaagaggtgtgaaagtagaagt--catatagaggaagttttagaaggaagtacatgataataggattaacatcacaacctacaagggatcactcatgt |
43030097 |
T |
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| Q |
304 |
atggctttgtaattttttgcattacaaaaagttgtgaatttaacacattgtacatttgaggtaacg |
369 |
Q |
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| T |
43030096 |
atgactttgtaaacttttgcattacaaaaagttgtgaatttaacatattggacatttgaggtaacg |
43030031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 24593594 - 24593656
Alignment:
| Q |
20 |
gctcaaattttaggaaaagatgtgcactcaaagccattgtctgatgcagatcgcatcaaggta |
82 |
Q |
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| T |
24593594 |
gctcaaattcttgggaaagatgtgcactcaaaaccattgtcagatgcagatcgtgtcaaggta |
24593656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 188 - 309
Target Start/End: Original strand, 24594837 - 24594958
Alignment:
| Q |
188 |
caagcagattaagaaagccttgaaaggtgtgaaagtagaagttacatatagaggaaggtttagaaggaagtacaggataacaggattaacatcacaacct |
287 |
Q |
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| T |
24594837 |
caagcagattaaaaaggccttaagaggagtaaaagttgaagtcacacatagaggaaatttcagaagaaagtacagaatatcaggattgacttcacaaccc |
24594936 |
T |
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| Q |
288 |
acaagagaactcaggtatggct |
309 |
Q |
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| T |
24594937 |
acaagggagcttatgtatggct |
24594958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 188 - 309
Target Start/End: Complemental strand, 24619277 - 24619156
Alignment:
| Q |
188 |
caagcagattaagaaagccttgaaaggtgtgaaagtagaagttacatatagaggaaggtttagaaggaagtacaggataacaggattaacatcacaacct |
287 |
Q |
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| T |
24619277 |
caagcagattaaaaaggccttaagaggagtaaaagttgaagtcacacatagaggaaatttcagaagaaagtacagaatatcaggattgacttcacaaccc |
24619178 |
T |
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| Q |
288 |
acaagagaactcaggtatggct |
309 |
Q |
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| T |
24619177 |
acaagggagcttatgtatggct |
24619156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 188 - 309
Target Start/End: Complemental strand, 24620425 - 24620304
Alignment:
| Q |
188 |
caagcagattaagaaagccttgaaaggtgtgaaagtagaagttacatatagaggaaggtttagaaggaagtacaggataacaggattaacatcacaacct |
287 |
Q |
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| T |
24620425 |
caagcagattaaaaaggccttaagaggagtaaaagttgaagtcacacatagaggaaatttcagaagaaagtacagaatatcaggattgacttcacaaccc |
24620326 |
T |
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| Q |
288 |
acaagagaactcaggtatggct |
309 |
Q |
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||||| || || | |||||||| |
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| T |
24620325 |
acaagggagcttatgtatggct |
24620304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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