View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10301_2D_low_20 (Length: 365)
Name: NF10301_2D_low_20
Description: NF10301_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10301_2D_low_20 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 30 - 365
Target Start/End: Original strand, 363200 - 363535
Alignment:
| Q |
30 |
gtacttttacctggtcgagacttagaaattttaacttgatttgttctggcgagccatacaacccaggtaagtggttcatattatcagctaacattgtatc |
129 |
Q |
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| T |
363200 |
gtacttttacctggtcgagacttagaaattttaacttgatttattctggcgagccatacaacccaggtaagtggttcatattatcagctaacattgtatc |
363299 |
T |
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| Q |
130 |
taacaccttgtcgtatacgttcttataagaaaactcgttgttttcaaaagacttgatgcagtaaatcaacgtttcagtgaaataacaaccactgaccgaa |
229 |
Q |
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| T |
363300 |
taacaccttgtcgtatacattcttataagaaaactcgttgttttcaaaagacttgatgcagtaaatcaacgtttcagtgaaataacaacctctgaccgaa |
363399 |
T |
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| Q |
230 |
taactcttgtaacgaatgcgaccttttcctgtaatctgtcccgtttggcatgcggacatgtaaactcctaatccccgctttgtcgaagcatttggtgcca |
329 |
Q |
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| T |
363400 |
tgactcttgtaacgaatgcgaccttttcatgtaatctgtcccgtttggcatgcggacatgtaaactcctaatccccgctttgtcgaagcatttggtgtca |
363499 |
T |
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| Q |
330 |
ttcctttgtcagtcacagggagaaggttactgacac |
365 |
Q |
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| T |
363500 |
ttcctttgtcagtgacagggagaaggttactgacac |
363535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 31 - 213
Target Start/End: Complemental strand, 41024041 - 41023859
Alignment:
| Q |
31 |
tacttttacctggtcgagacttagaaattttaacttgatttgttctggcgagccatacaacccaggtaagtggttcatattatcagctaacattgtatct |
130 |
Q |
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| T |
41024041 |
tacttttacatggtcgagacttataaattttaacttgatttgttatggcgagccatacaacccaagtaagttgttcatcttatcagctaacattttttca |
41023942 |
T |
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| Q |
131 |
aacaccttgtcgtatacgttcttataagaaaactcgttgttttcaaaagacttgatgcagtaaatcaacgtttcagtgaaata |
213 |
Q |
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| T |
41023941 |
catactgagtcgtatacattcttatacgaaaaatcgttgttcttaaaagacttgatgatgtaaatcaacgtttcagtgcaata |
41023859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 272 - 365
Target Start/End: Complemental strand, 41023794 - 41023701
Alignment:
| Q |
272 |
gtttggcatgcggacatgtaaactcctaatccccgctttgtcgaagcatttggtgccattcctttgtcagtcacagggagaaggttactgacac |
365 |
Q |
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| T |
41023794 |
gtttagcaagcggacaagtaaacacatattctccactttttcgaagcttttggtgtcatttgtttgtcagtgatagggagaaggttactgacac |
41023701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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