View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10301_2D_low_23 (Length: 340)
Name: NF10301_2D_low_23
Description: NF10301_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10301_2D_low_23 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 19643655 - 19643315
Alignment:
| Q |
1 |
tacatacccaagaa-atcatgagaaccaaaaatcttacaccaacatgcatgtgttggtttcagcttagaagagagaaagccccacaagctattgataaaa |
99 |
Q |
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|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
19643655 |
tacatacccaagaatatcatgagaaccaaaaatcttataccaacatgcatgtgttggtttcagcttacaagagagaaagccccacaagctattgataaaa |
19643556 |
T |
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| Q |
100 |
ttgcatgctattactacattaatgatacaataatcttgttatgannnnnnnnnnnnnnnnncattatcaaggcatatatattcatgaaattttaagtatt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
19643555 |
ttgcatgctattactacattaatgatacaataatcttgttatgattttatttttaatttttcattatcaaggcatatatattcatgaaattttaagtatt |
19643456 |
T |
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| Q |
200 |
tggtggaaaggttttccattccagatgtaaaataacaaaatgatgggtaaagatagtagtatgatgaaggcatgggaggccacggtgaagaagacacagg |
299 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
19643455 |
tggtggaaagattttccattccagatgtaaaataacaaaatgatgggtaaagatagtagtatgatgaaggcatgggaggccacggtgaagaagacacaag |
19643356 |
T |
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| Q |
300 |
cagttgcgaagaagcgtgcaaatagcatatttggatcaaca |
340 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
19643355 |
cagttgcgaagaagcgtgcaaatagcatatttggatcaaca |
19643315 |
T |
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