View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10301_2D_low_24 (Length: 317)
Name: NF10301_2D_low_24
Description: NF10301_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10301_2D_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 18 - 276
Target Start/End: Complemental strand, 4121600 - 4121342
Alignment:
| Q |
18 |
agtgtttgtataacatgtagagtttatcgttcactgacaattgactatgattcacatctttatgcattcgacagtgaacagtggaagaagccatggtgtg |
117 |
Q |
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| T |
4121600 |
agtgtttgtataacatgtagagtttatcgttcactgacaattgactatgattcacatctttatgcattcgacagtgaacagtggaagaagccatggcgtg |
4121501 |
T |
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| Q |
118 |
attgatgatctcaaaaccgaatgcttggagcatgaagcaaccagagtttggcctagaaggattaggagaatcatagagtattttattcaagagaaatgtt |
217 |
Q |
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| T |
4121500 |
attgataatctcaaaaccgaatgtttggagcatgaagcaaccagagtttggcctagaaggattaggagaatcatagagtattatattcaagagaaatgtt |
4121401 |
T |
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| Q |
218 |
tataatacattttcttgacattctttttagtacactattattaggtgaaatttgtggct |
276 |
Q |
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| T |
4121400 |
tataatacattttcttgacattctttttagtacactattattaggtgaaatttgtggct |
4121342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 4136218 - 4136174
Alignment:
| Q |
125 |
atctcaaaaccgaatgcttggagcatgaagcaaccagagtttggc |
169 |
Q |
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| T |
4136218 |
atctcacaactgaatgcttggagcatgaagcaagcacagtttggc |
4136174 |
T |
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