View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10301_2D_low_27 (Length: 314)
Name: NF10301_2D_low_27
Description: NF10301_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10301_2D_low_27 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 50507247 - 50506950
Alignment:
| Q |
1 |
tcacgtatagactggctgctagttattcgttaaattttgcacatgagtttctttgcaccaaatagaatagttcaatattaaaaattggagatccaactca |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
50507247 |
tcacgtatagactggttgctagttattcgttaaattttgcacatgagtttctttgcaccaaatagcatagttcaatattaaaaattggagatccaactca |
50507148 |
T |
|
| Q |
101 |
aatattaaatacaaactcctaatnnnnnnnnnntgtattttttaaaagaaaatatcatttatttaaaccgtaaataacataaacttaagactaggctaac |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
50507147 |
aatattaaatacaaactcctaataaaaaaaa--tgtattttttaaaagaaaatatcatttatttaaaccgtaaataacataaacttaaggctaggctaac |
50507050 |
T |
|
| Q |
201 |
aatagtcatctttataaactaagtaaaagtaag---tttgtacggaagtaactaactaatttttgttgagttccattaaccactatagttgttctgatgt |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
50507049 |
aatagtcatctttataaactaagtaaaagtaagtaatttgtacgggagtaactaactaatttttgttgagttccattaaccactataattgttctgatgt |
50506950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 212 - 269
Target Start/End: Original strand, 12704673 - 12704730
Alignment:
| Q |
212 |
ttataaactaagtaaaagtaagtttgtacggaagtaactaactaatttttgttgagtt |
269 |
Q |
| |
|
||||||| |||||||||||||||||||| || || |||||||||| || ||||||||| |
|
|
| T |
12704673 |
ttataaattaagtaaaagtaagtttgtatggtaggaactaactaacttgtgttgagtt |
12704730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 126; Significance: 6e-65; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 17 - 297
Target Start/End: Original strand, 10784253 - 10784541
Alignment:
| Q |
17 |
tgctagttattcgttaaattttgcacatgagtttctttgcaccaaatagaatagttcaatattaaaaattggagatccaactcaaatattaaatacaaac |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||| |||| || |
|
|
| T |
10784253 |
tgctagttattcgttaaattttgcacatgagtttctttgcaccaaatagcatagctcaatattaaaaattggagatcccgctcaaatattatatacggac |
10784352 |
T |
|
| Q |
117 |
tcctaatnnnnnnnnnntgtattttttaaaagaaaatatcatttatttaaaccgtaaataacataaacttaagactaggctaacaatagtcatctttata |
216 |
Q |
| |
|
|||| || | ||||||||||| || |||||||||||||||| | |||||||||||| | ||| |||||| |||||||||||||||||| |
|
|
| T |
10784353 |
tcctgatataaaaatgtatttttttttaaaaggaattatcatttatttaaactgcaaataacataaaatcaaggttaggcttacaatagtcatctttata |
10784452 |
T |
|
| Q |
217 |
aactaagt--------aaaagtaagtttgtacggaagtaactaactaatttttgttgagttccattaaccactatagttgttctgatgt |
297 |
Q |
| |
|
|||||||| ||||||||||||||| || |||||||||||| ||||||||||| | |||||||||||||| |||||||||||| |
|
|
| T |
10784453 |
aactaagtaataagtaaaaagtaagtttgtatgggagtaactaactagtttttgttgagcttcattaaccactataattgttctgatgt |
10784541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 267
Target Start/End: Original strand, 765330 - 765393
Alignment:
| Q |
203 |
tagtcatctttataaactaagtaaaagtaagtttgtacggaagtaactaactaatttttgttgag |
267 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||| | ||| |||||||||| || ||||||| |
|
|
| T |
765330 |
tagtcattcttataaattaagtaaaagtaagtttgta-gtaagaaactaactaaattgtgttgag |
765393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University