View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10301_2D_low_28 (Length: 304)

Name: NF10301_2D_low_28
Description: NF10301_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10301_2D_low_28
NF10301_2D_low_28
[»] chr4 (1 HSPs)
chr4 (20-304)||(190809-191093)


Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 20 - 304
Target Start/End: Original strand, 190809 - 191093
Alignment:
Q  20 aaccggaagatgagcaaggttccgaaaggatacgttgccgtttatgttggaccggagtttagaaggtttgtgattccaataaggttcttgagcatggctg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  190809 aaccggaagatgagcaaggttccgaaaggatacgttgccgtttatgttggaccggagtttagaaggtttgtgattccaataaggttcttgagcatggctg 190908  T
Q  120 aggtgaaggagttgatggatgatgtagctgaggagtttggttgtgattatcacgctgatggtgctcttcatattccatgtgatgaagattattttcgcaa 219  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  190909 aggtgaaggagttgatggatgatatagctgaggagtttggttgtgattatcacgctgatggtgctcttcatattccatgtgatgaagattattttcgcaa 191008  T
Q  220 tgttttgattaattgttttgcaacacaaggcagggtatcttctaagaatcataagatcaaacttggtaataagaatgccttgatt 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  191009 tgttttgattaattgttttgcaacacaaggcagggtatcttctaagaatcataagatcaaacttggtaataagaatgccttgatt 191093  T

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