View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10301_2D_low_32 (Length: 300)
Name: NF10301_2D_low_32
Description: NF10301_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10301_2D_low_32 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 11 - 265
Target Start/End: Complemental strand, 50708569 - 50708314
Alignment:
| Q |
11 |
aagaaacatttcccacaaaaagagggcttgataaaagttaaaaatacatccacctcttaagcttatctctatctagaccgtttggtaagaaaagaagaac |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50708569 |
aagaaacatttcccacaaaaagagggcttgataaaagttaaaaatacatccacctcttaagcttatctctatctagaccgtttggtaagaaaagaagaac |
50708470 |
T |
|
| Q |
111 |
ctaggttgaactgtttggtcccaacataaaatatagtgacacaataattggtcggtcccatatatgtat-tattttcaggtgttataaaagctcgatttg |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||| ||||| |
|
|
| T |
50708469 |
ctaggttgaactgtttggtcccaacataaaatatagtgacacaataattggtcggtcccatccatatatgtattttcaggtgttataaaagctgaatttg |
50708370 |
T |
|
| Q |
210 |
gccaaagtgcctaaaacttcaaaatttatccattgctttaatgtcctagctctccc |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50708369 |
gccaaagtgcctaaaacttcaaaatttatccattgctttaatgtcctagctctccc |
50708314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University