View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10301_2D_low_35 (Length: 296)
Name: NF10301_2D_low_35
Description: NF10301_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10301_2D_low_35 |
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Alignment Details
Target: chr6 (Bit Score: 170; Significance: 3e-91; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 67 - 284
Target Start/End: Complemental strand, 3045854 - 3045630
Alignment:
| Q |
67 |
gtgttgataaaatctcttgttgcatagta------ataataataacagcaacaacaactaaccagtctcgtggcctcattgttgattatcatcgactgga |
160 |
Q |
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||||| ||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3045854 |
gtgttcataaaatctcttgttgcatagtagtaataataataataataataacaacaactaaccagtctcgtggcctcgttgttgattatcatcgactgga |
3045755 |
T |
|
| Q |
161 |
attggtagtctgattcgacaatgcttcatgtaggcattgaatcccaaaattaaatatttatgccctttaagtacctcgttcacccttt-tttgaactctt |
259 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3045754 |
attggtagtctgattcgacaatgcttcatgtaggcattgaatcctaaaattaaatatttatgccctttaagtacctcgttcaccctttctttgaactctt |
3045655 |
T |
|
| Q |
260 |
gaactggaagtacgattggatgatg |
284 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
3045654 |
gaactggaagtacgattggatgatg |
3045630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 139 - 270
Target Start/End: Original strand, 33468633 - 33468765
Alignment:
| Q |
139 |
ttgttgattatcatcgactggaattggtagtctgattcgacaatgcttcatgtaggcattgaatcccaaaattaaatatttatgccctttaagtacctcg |
238 |
Q |
| |
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||||| || ||||| || |||||||| ||| |||| ||| |||||||||||||| |||||||||||||| |||| ||||||| ||||||||||| |
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| T |
33468633 |
ttgttcatcatcattgattggaattgaaagtgtgatacgataatgcttcatgtagttgttgaatcccaaaatcaaatgattatgccttttaagtacctta |
33468732 |
T |
|
| Q |
239 |
ttcacccttt-tttgaactcttgaactggaagt |
270 |
Q |
| |
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|||| ||||| |||||| | || |||||||||| |
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| T |
33468733 |
ttcatcctttctttgaattttttaactggaagt |
33468765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 159 - 270
Target Start/End: Complemental strand, 34604149 - 34604037
Alignment:
| Q |
159 |
gaattggtagtctgattcgacaatgcttcatgtaggcattgaatcccaaaattaaatatttatgccctttaagtacctcgttcaccctt-ttttgaactc |
257 |
Q |
| |
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||||||| ||| |||| |||| || |||||||||||| |||||||| ||||||||| |||||||||||||||| || |||| |||| |||||| | |
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| T |
34604149 |
gaattggaagtgtgatacgacgatccttcatgtaggcgttgaatccaaaaattaaacgattatgccctttaagtaactttttcatccttcctttgaaatt |
34604050 |
T |
|
| Q |
258 |
ttgaactggaagt |
270 |
Q |
| |
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||||||||||||| |
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| T |
34604049 |
ttgaactggaagt |
34604037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 159 - 270
Target Start/End: Complemental strand, 34725426 - 34725314
Alignment:
| Q |
159 |
gaattggtagtctgattcgacaatgcttcatgtaggcattgaatcccaaaattaaatatttatgccctttaagtacctcgttcaccctt-ttttgaactc |
257 |
Q |
| |
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||||||| ||| |||| |||| || |||||||||||| |||||||| ||||||||| |||||||||||||||| || |||| |||| |||||| | |
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| T |
34725426 |
gaattggaagtgtgatacgacgatccttcatgtaggcgttgaatccaaaaattaaacgattatgccctttaagtaactttttcatccttcctttgaaatt |
34725327 |
T |
|
| Q |
258 |
ttgaactggaagt |
270 |
Q |
| |
|
||||||||||||| |
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|
| T |
34725326 |
ttgaactggaagt |
34725314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 3046189 - 3046139
Alignment:
| Q |
5 |
tggagcatcaacatacgtgaagtacaataatcataataataactggcggaa |
55 |
Q |
| |
|
||||| |||| |||| || |||||||||||||||||||||||||||||||| |
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| T |
3046189 |
tggagtatcagcatatgtcaagtacaataatcataataataactggcggaa |
3046139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 142 - 271
Target Start/End: Original strand, 30865192 - 30865322
Alignment:
| Q |
142 |
ttgattatcatcgactggaattggtagtctgattcgacaatgcttcatgtaggcattgaatcccaaaattaaatatttatgccctttaagtacctcgttc |
241 |
Q |
| |
|
||||| |||||||||||| ||||| |||||||||||| ||||||||||||||| ||||||||||| ||||||| ||| || ||||| ||||| || ||| |
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| T |
30865192 |
ttgatgatcatcgactgggattggcagtctgattcgataatgcttcatgtaggtgttgaatcccaagattaaatgtttctggcctttgagtacatcattc |
30865291 |
T |
|
| Q |
242 |
acccttt-tttgaactcttgaactggaagta |
271 |
Q |
| |
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||| ||| || ||| |||||||||||||||| |
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| T |
30865292 |
accttttgttagaattcttgaactggaagta |
30865322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 157 - 270
Target Start/End: Original strand, 38868786 - 38868900
Alignment:
| Q |
157 |
tggaattggtagtctgattcgacaatgcttcatgtaggcattgaatcccaaaattaaatatttatgccctttaagtacctcgttcacccttt-tttgaac |
255 |
Q |
| |
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||||||||| |||||||||||| ||||| |||||||| |||||||||||||||||||| ||||||||||||| ||||| |||||| ||| |||||| |
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| T |
38868786 |
tggaattggaagtctgattcgataatgcctcatgtagtagttgaatcccaaaattaaatacatatgccctttaaggacctcattcaccatttgtttgaat |
38868885 |
T |
|
| Q |
256 |
tcttgaactggaagt |
270 |
Q |
| |
|
||||||||||||||| |
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|
| T |
38868886 |
tcttgaactggaagt |
38868900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 236
Target Start/End: Complemental strand, 39046822 - 39046734
Alignment:
| Q |
148 |
atcatcgactggaattggtagtctgattcgacaatgcttcatgtaggcattgaatcccaaaattaaatatttatgccctttaagtacct |
236 |
Q |
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|||||||| ||||||||| ||||||||| | |||||||||||||| |||||||| || ||||||| ||||||||| |||||||| |
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| T |
39046822 |
atcatcgattggaattggaagtctgattgcatgatgcttcatgtaggagttgaatcctaatattaaatgattatgccctagaagtacct |
39046734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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