View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10301_2D_low_37 (Length: 295)

Name: NF10301_2D_low_37
Description: NF10301_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10301_2D_low_37
NF10301_2D_low_37
[»] chr7 (15 HSPs)
chr7 (18-280)||(26297398-26297660)
chr7 (20-280)||(26250800-26251060)
chr7 (18-280)||(26242350-26242612)
chr7 (20-237)||(26223487-26223704)
chr7 (20-237)||(26203849-26204066)
chr7 (18-269)||(26191218-26191469)
chr7 (20-250)||(26128522-26128752)
chr7 (20-250)||(26155158-26155388)
chr7 (20-236)||(26179038-26179254)
chr7 (20-132)||(26301766-26301878)
chr7 (25-250)||(19103509-19103734)
chr7 (37-236)||(26087753-26087952)
chr7 (37-236)||(26111541-26111740)
chr7 (28-131)||(26207398-26207501)
chr7 (28-131)||(26226933-26227036)
[»] chr4 (1 HSPs)
chr4 (20-251)||(44903205-44903436)


Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 26297398 - 26297660
Alignment:
18 taaagaacttcaaccagattgtatagtgacagatatgaagtatccttggactgtagaatcagctgcaaaactaaacattccaaggattcacttttacagc 117  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
26297398 taaagaacttcaaccagattgtatagtgacagatatgaaatacccttggactgtggaatcagctgcaaaactaaacattccaaggattgacttttacagc 26297497  T
118 tcaagctacttctcctattgtgcaatttattttgttagaaaatataaaccccattataatttagtttctgaaacacagagatttacaattccttgtttac 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
26297498 tcaagctacttctcctattgtgcaatttattttgttagaaaatataaaccccattataatttagtttctgaaacacagaaatttacaattccttgtttac 26297597  T
218 ctcataccattgagatgacatgtctgcagcttcgtaattgggaaagggaaaacaatgctatga 280  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||    
26297598 ctcataccattgagatgacacgtctgcagcttcataattgggaaagggaaaacaacgctatga 26297660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 20 - 280
Target Start/End: Original strand, 26250800 - 26251060
Alignment:
20 aagaacttcaaccagattgtatagtgacagatatgaagtatccttggactgtagaatcagctgcaaaactaaacattccaaggattcacttttacagctc 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
26250800 aagaacttcaaccagattgtatagtgacagatatgaagtatccttggactgtagaatcagctgcaaaactaaacattccaaggatttacttttgcagctc 26250899  T
120 aagctacttctcctattgtgcaatttattttgttagaaaatataaaccccattataatttagtttctgaaacacagagatttacaattccttgtttacct 219  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
26250900 aagctacttctccgaatgtgcaatttattttgttagaaaatataaaccccattataatttagtttctgatacacagaaatttacaattccttgtttacct 26250999  T
220 cataccattgagatgacatgtctgcagcttcgtaattgggaaagggaaaacaatgctatga 280  Q
    ||||| |||||||||||  ||| ||| ||| || ||||||||  |||||||||||||||||    
26251000 catacaattgagatgacccgtcagcaactttgtgattgggaattggaaaacaatgctatga 26251060  T

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Target: chr7; HSP #3
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 26242350 - 26242612
Alignment:
18 taaagaacttcaaccagattgtatagtgacagatatgaagtatccttggactgtagaatcagctgcaaaactaaacattccaaggattcacttttacagc 117  Q
    |||||| |||||||||||||||||||| || ||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||    
26242350 taaagatcttcaaccagattgtatagtcactgatatgatgtatccttggactgtggaatcagctgcaaaactaaatattccaaggattcacttttgcagc 26242449  T
118 tcaagctacttctcctattgtgcaatttattttgttagaaaatataaaccccattataatttagtttctgaaacacagagatttacaattccttgtttac 217  Q
    ||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
26242450 tcaagctacttctccgactgtggaatttattttgttagaaaatataaaccccattataatttagtttctgatacacagaaatttacaattccttgtttac 26242549  T
218 ctcataccattgagatgacatgtctgcagcttcgtaattgggaaagggaaaacaatgctatga 280  Q
    |||||||  ||||||||||  |||| || ||| || | ||||||||||||| ||||| |||||    
26242550 ctcatacagttgagatgacccgtcttcaactttgtgactgggaaagggaaaccaatgttatga 26242612  T

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Target: chr7; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 20 - 237
Target Start/End: Original strand, 26223487 - 26223704
Alignment:
20 aagaacttcaaccagattgtatagtgacagatatgaagtatccttggactgtagaatcagctgcaaaactaaacattccaaggattcacttttacagctc 119  Q
    |||| |||||||||||||||||| | || |||||||  ||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||    
26223487 aagatcttcaaccagattgtataataacggatatgacttatccttggacagttgaatcagctgcaaaactaaacattccaaggatttacttttacagctc 26223586  T
120 aagctacttctcctattgtgcaatttattttgttagaaaatataaaccccattataatttagtttctgaaacacagagatttacaattccttgtttacct 219  Q
    ||||||||||||| |||||||||  |||||||||||||| |||| ||| ||| |||||||||||||||| ||||||| ||||||  |||||||||| |||    
26223587 aagctacttctccaattgtgcaagctattttgttagaaagtatagacctcatgataatttagtttctgatacacagaaatttactgttccttgtttgcct 26223686  T
220 cataccattgagatgaca 237  Q
    ||||| ||||||||||||    
26223687 catacaattgagatgaca 26223704  T

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Target: chr7; HSP #5
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 20 - 237
Target Start/End: Original strand, 26203849 - 26204066
Alignment:
20 aagaacttcaaccagattgtatagtgacagatatgaagtatccttggactgtagaatcagctgcaaaactaaacattccaaggattcacttttacagctc 119  Q
    |||| |||||||||||||||||| | || |||||||  ||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||    
26203849 aagatcttcaaccagattgtataataactgatatgacttatccttggacagttgaatcagctgcaaaactaaacattccaaggatttacttttacagctc 26203948  T
120 aagctacttctcctattgtgcaatttattttgttagaaaatataaaccccattataatttagtttctgaaacacagagatttacaattccttgtttacct 219  Q
    ||||||||||||| ||||||| |  |||||||||||||| |||| ||| ||| |||||||||||||||| ||||||| ||||||  |||||||||| |||    
26203949 aagctacttctccaattgtgcgagctattttgttagaaagtatagacctcatgataatttagtttctgatacacagaaatttaccgttccttgtttgcct 26204048  T
220 cataccattgagatgaca 237  Q
    ||||| ||||||||||||    
26204049 catacaattgagatgaca 26204066  T

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Target: chr7; HSP #6
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 18 - 269
Target Start/End: Original strand, 26191218 - 26191469
Alignment:
18 taaagaacttcaaccagattgtatagtgacagatatgaagtatccttggactgtagaatcagctgcaaaactaaacattccaaggattcacttttacagc 117  Q
    |||||| |||||||||||||||||||| || ||||||| |||||||||||| || ||| ||||||||||||||||||||||||||||||||||||| |||    
26191218 taaagatcttcaaccagattgtatagtcactgatatgatgtatccttggacagtggaagcagctgcaaaactaaacattccaaggattcacttttatagc 26191317  T
118 tcaagctacttctcctattgtgcaatttattttgttagaaaatataaaccccattataatttagtttctgaaacacagagatttacaattccttgtttac 217  Q
    ||||| |||||||||   |||||  || ||||| | |  |||||||  || ||| |||||||||||||||| ||||||| |||||| |||||| |||| |    
26191318 tcaagttacttctccagctgtgcctttcattttatcatgaaatataggcctcatgataatttagtttctgatacacagaaatttactattcctagttttc 26191417  T
218 ctcataccattgagatgacatgtctgcagcttcgtaattgggaaagggaaaa 269  Q
    |||||||||||||||||||   ||||||| ||| | |||||  |||||||||    
26191418 ctcataccattgagatgacccctctgcagattcctgattggttaagggaaaa 26191469  T

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Target: chr7; HSP #7
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 20 - 250
Target Start/End: Original strand, 26128522 - 26128752
Alignment:
20 aagaacttcaaccagattgtatagtgacagatatgaagtatccttggactgtagaatcagctgcaaaactaaacattccaaggattcacttttacagctc 119  Q
    |||| |||||||| |||||||||||||||||||||| |  ||||||||| || ||| ||||||||||||||   |||||||| ||||| | | |||||||    
26128522 aagaccttcaacctgattgtatagtgacagatatgatgcttccttggacggtcgaagcagctgcaaaactaggtattccaagaattcattataacagctc 26128621  T
120 aagctacttctcctattgtgcaatttattttgttagaaaatataaaccccattataatttagtttctgaaacacagagatttacaattccttgtttacct 219  Q
    ||||||||||||| | ||||||    ||||| | |  || |||| |||  || |||||||||||||||| ||||||| ||||||||||||| |||| |||    
26128622 aagctacttctccaactgtgcagaacattttatcatgaagtatagaccaaatgataatttagtttctgatacacagaaatttacaattcctggtttgcct 26128721  T
220 cataccattgagatgacatgtctgcagcttc 250  Q
    ||||| |||||||||||   |||||||||||    
26128722 catacaattgagatgactcctctgcagcttc 26128752  T

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Target: chr7; HSP #8
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 20 - 250
Target Start/End: Original strand, 26155158 - 26155388
Alignment:
20 aagaacttcaaccagattgtatagtgacagatatgaagtatccttggactgtagaatcagctgcaaaactaaacattccaaggattcacttttacagctc 119  Q
    |||| |||||||| |||||||||||||||||||||| || ||||||||| || ||| ||||||||| ||||   |||||||| ||||| | |||||||||    
26155158 aagaccttcaacctgattgtatagtgacagatatgatgtttccttggacggtcgaagcagctgcaagactaggtattccaagaattcattattacagctc 26155257  T
120 aagctacttctcctattgtgcaatttattttgttagaaaatataaaccccattataatttagtttctgaaacacagagatttacaattccttgtttacct 219  Q
    ||||||||||||| |||||||   | ||||  | |  || |||| ||| ||| |||||||||||||||| ||||| | ||||||||||||| |||| |||    
26155258 aagctacttctccaattgtgctgctcatttgatcatgaagtatagacctcatgataatttagtttctgatacacacaaatttacaattcctggtttgcct 26155357  T
220 cataccattgagatgacatgtctgcagcttc 250  Q
    ||||| ||||| |||||   |||||||||||    
26155358 catacaattgaaatgactcctctgcagcttc 26155388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 20 - 236
Target Start/End: Original strand, 26179038 - 26179254
Alignment:
20 aagaacttcaaccagattgtatagtgacagatatgaagtatccttggactgtagaatcagctgcaaaactaaacattccaaggattcacttttacagctc 119  Q
    |||| |||||||| |||||||| || || ||||||  |||||| ||||| || ||| ||||||||||||||   |||||||| ||||| | |||||||||    
26179038 aagatcttcaacctgattgtattgtcactgatatgtcgtatccgtggacagtggaagcagctgcaaaactaggtattccaagaattcattattacagctc 26179137  T
120 aagctacttctcctattgtgcaatttattttgttagaaaatataaaccccattataatttagtttctgaaacacagagatttacaattccttgtttacct 219  Q
    ||||||||||||| ||||||    | ||||  | |  || |||| |||  || |||||||||||||||| ||||||| |||||||||||||||||| |||    
26179138 aagctacttctccaattgtgttgctcatttgatcatgaagtatagaccaaatgataatttagtttctgatacacagaaatttacaattccttgttttcct 26179237  T
220 cataccattgagatgac 236  Q
    ||||| |||||||||||    
26179238 catacaattgagatgac 26179254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 20 - 132
Target Start/End: Original strand, 26301766 - 26301878
Alignment:
20 aagaacttcaaccagattgtatagtgacagatatgaagtatccttggactgtagaatcagctgcaaaactaaacattccaaggattcacttttacagctc 119  Q
    ||||||||||||||||||||||||| || ||||||  |||||||||||| || ||||||||| ||||||| |||||||| |||||  |||||||||||||    
26301766 aagaacttcaaccagattgtatagtcaccgatatgctgtatccttggacagttgaatcagcttcaaaactgaacattccgaggatgtacttttacagctc 26301865  T
120 aagctacttctcc 132  Q
    |||||||||||||    
26301866 aagctacttctcc 26301878  T

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Target: chr7; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 25 - 250
Target Start/End: Complemental strand, 19103734 - 19103509
Alignment:
25 cttcaaccagattgtatagtgacagatatgaagtatccttggactgtagaatcagctgcaaaactaaacattccaaggattcacttttacagctcaagct 124  Q
    |||| ||||||||||||||| || |||  || |||| ||||||| || ||| ||||||||||||||   |||||||| ||||||| ||||||||||||||    
19103734 cttcgaccagattgtatagttactgatcagatgtatgcttggaccgtcgaagcagctgcaaaactaggtattccaagaattcactattacagctcaagct 19103635  T
125 acttctcctattgtgcaatttattttgttagaaaatataaaccccattataatttagtttctgaaacacagagatttacaattccttgtttacctcatac 224  Q
    |||||||| | ||||   |  ||||| | |  || |||| ||| ||| |||||||||||||||| || |||| ||||||  ||||| |||| ||||||||    
19103634 acttctccaactgtgttttccattttatcatgaagtatagacctcataataatttagtttctgatacgcagaaatttacggttcctggtttgcctcatac 19103535  T
225 cattgagatgacatgtctgcagcttc 250  Q
    ||||||||||||   |||||||||||    
19103534 cattgagatgactcctctgcagcttc 19103509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 37 - 236
Target Start/End: Original strand, 26087753 - 26087952
Alignment:
37 tgtatagtgacagatatgaagtatccttggactgtagaatcagctgcaaaactaaacattccaaggattcacttttacagctcaagctacttctcctatt 136  Q
    |||||||||||| |||||| || ||||||||| || ||| ||||||||||||||   |||||||| ||||||| |||||||||||||||||||||| | |    
26087753 tgtatagtgacaaatatgatgtttccttggacggtcgaagcagctgcaaaactaggtattccaagaattcactattacagctcaagctacttctccaact 26087852  T
137 gtgcaatttattttgttagaaaatataaaccccattataatttagtttctgaaacacagagatttacaattccttgtttacctcataccattgagatgac 236  Q
    |||||    ||||| | |  || |||| ||| ||| ||||||| |||||||| ||||||| ||||||  ||||| | || |||||| | |||||||||||    
26087853 gtgcagaacattttatcatgaagtatagacctcatgataatttggtttctgatacacagaaatttactgttcctggattccctcattcaattgagatgac 26087952  T

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Target: chr7; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 37 - 236
Target Start/End: Original strand, 26111541 - 26111740
Alignment:
37 tgtatagtgacagatatgaagtatccttggactgtagaatcagctgcaaaactaaacattccaaggattcacttttacagctcaagctacttctcctatt 136  Q
    |||||||||||| |||||| || ||||||||| || ||| ||||||||||||||   |||||||| ||||||| |||||||||||||||||||||| | |    
26111541 tgtatagtgacaaatatgatgtttccttggacggtcgaagcagctgcaaaactaggtattccaagaattcactattacagctcaagctacttctccaact 26111640  T
137 gtgcaatttattttgttagaaaatataaaccccattataatttagtttctgaaacacagagatttacaattccttgtttacctcataccattgagatgac 236  Q
    |||||    ||||| | |  || |||| ||| ||| ||||||| |||||||| ||||||| ||||||  ||||| | || |||||| | |||||||||||    
26111641 gtgcagaacattttatcatgaagtatagacctcatgataatttggtttctgatacacagaaatttactgttcctggattccctcattcaattgagatgac 26111740  T

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Target: chr7; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 131
Target Start/End: Original strand, 26207398 - 26207501
Alignment:
28 caaccagattgtatagtgacagatatgaagtatccttggactgtagaatcagctgcaaaactaaacattccaaggattcacttttacagctcaagctact 127  Q
    |||||||||||||||||  ||||||||   ||||| ||||| || |||||||||||||||||   |||||||||| || ||| |||||||||||||||||    
26207398 caaccagattgtatagtctcagatatgttatatccatggacagtggaatcagctgcaaaactcggcattccaaggctttactattacagctcaagctact 26207497  T
128 tctc 131  Q
    ||||    
26207498 tctc 26207501  T

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Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 131
Target Start/End: Original strand, 26226933 - 26227036
Alignment:
28 caaccagattgtatagtgacagatatgaagtatccttggactgtagaatcagctgcaaaactaaacattccaaggattcacttttacagctcaagctact 127  Q
    |||| ||||||||||||  ||||||||   | ||||||||| ||  |||||||||||||||    |||||| ||| || ||| |||||||||||||||||    
26226933 caacaagattgtatagtctcagatatgttatttccttggacagtgcaatcagctgcaaaacgcggcattcctaggctttactattacagctcaagctact 26227032  T
128 tctc 131  Q
    ||||    
26227033 tctc 26227036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 5e-59; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 20 - 251
Target Start/End: Original strand, 44903205 - 44903436
Alignment:
20 aagaacttcaaccagattgtatagtgacagatatgaagtatccttggactgtagaatcagctgcaaaactaaacattccaaggattcacttttacagctc 119  Q
    |||| |||||||||||||||||||| || ||||||| |  |||||||||||| ||||||||||||||||||| |||||| ||| || | | |||||||||    
44903205 aagatcttcaaccagattgtatagtaactgatatgatgattccttggactgtggaatcagctgcaaaactaagcattcctaggctttattattacagctc 44903304  T
120 aagctacttctcctattgtgcaatttattttgttagaaaatataaaccccattataatttagtttctgaaacacagagatttacaattccttgtttacct 219  Q
    ||||||||||||| ||||||||  ||||||||||||||| |||| ||| ||| || ||||||||||||| |||||||  ||||| ||||||||||| |||    
44903305 aagctacttctccaattgtgcatgttattttgttagaaagtatagacctcatgatcatttagtttctgatacacagaagtttactattccttgtttgcct 44903404  T
220 cataccattgagatgacatgtctgcagcttcg 251  Q
    ||||||||||||||||   |||||||||||||    
44903405 cataccattgagatgagccgtctgcagcttcg 44903436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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