View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10301_2D_low_39 (Length: 283)
Name: NF10301_2D_low_39
Description: NF10301_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10301_2D_low_39 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 41080962 - 41081222
Alignment:
| Q |
1 |
tttaggtaatttattttgtataatctgcatatataagacagctgcttctattttatattatggtggagtatgataagtaggggtgttatgtcgtttcttg |
100 |
Q |
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| T |
41080962 |
tttaggtaatttattttgtataatctgcatatataagacagctgcttctattttatattatggtggagtatgataagtaggggggttatgtcgtttcttg |
41081061 |
T |
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| Q |
101 |
acaggaaatggcattttaaccaatcaaaatcatagcatatcccttaccaattaatatggttctactcatgcctaatgttaaaactaactttagattggtc |
200 |
Q |
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| T |
41081062 |
acaggaaatggcattttaaccaatcaaaatcatagcatatcccttacc----aatatggttctactcatgcctaatgttaaaactaactttagattggtc |
41081157 |
T |
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| Q |
201 |
tttcattatctatggtggcttaggcaattgagaccttagttatgtcatattgtcttgctcaggat |
265 |
Q |
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| T |
41081158 |
tttcattatctatggtggcttaggcaattgagacctttgttatgtcatattgtcttgctcaggat |
41081222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 3 - 265
Target Start/End: Original strand, 41088974 - 41089232
Alignment:
| Q |
3 |
taggtaatttattttgtataatctgcatatataagacagctgcttctattttatattatggtggagtatgataagtaggggtgttatgtcgtttcttgac |
102 |
Q |
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| T |
41088974 |
taggtaatttattttgtataatctacatatatgaggcagctgcttctattttatatcatggtggagtttgataagccggggtctgatgtggtttcttgac |
41089073 |
T |
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| Q |
103 |
aggaaatggcattttaaccaatcaaaatcatagcatatcccttaccaattaatatggttctactcatgcctaatgttaaaactaactttagattggtctt |
202 |
Q |
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| T |
41089074 |
aggaaatggcattttaacgaatctaaatcatagcttatcccttacc----attatggttctagtcatgcataatgttaaaactacctttagattggtctt |
41089169 |
T |
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| Q |
203 |
tcattatctatggtggcttaggcaattgagaccttagttatgtcatattgtcttgctcaggat |
265 |
Q |
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| T |
41089170 |
tcgttatctatggtggcttaggcaattgagactttagttatgtcatattgtcttgcttaggat |
41089232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 49 - 221
Target Start/End: Original strand, 41103396 - 41103563
Alignment:
| Q |
49 |
tattttatattatggtggagtatgataagtaggggtgttatgtcgtttcttgacaggaaatggcattttaaccaatcaaaatcatagcatatcccttacc |
148 |
Q |
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| T |
41103396 |
tattttatatcatggtggagtttgataagccagggtctgatgtggtttcttgacag-aaatgccattttaaccaattaaaatcatagcttatccgttacc |
41103494 |
T |
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| Q |
149 |
aattaatatggttctactcatgcctaatgttaaaactaactttagattggtctttcattatctatggtggctt |
221 |
Q |
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| T |
41103495 |
aat----atgattctactcatgcataatgttgaaactacctttaaattggcctttcgttatctatggtggctt |
41103563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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