View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10301_2D_low_42 (Length: 280)
Name: NF10301_2D_low_42
Description: NF10301_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10301_2D_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 50507223 - 50507483
Alignment:
| Q |
1 |
taactagcagccagtctatacgtgatttgttggaaataggctaggtgaaaaagcaagagattgtgcctaggtcgtttgcnnnnnnn--atcgtacctcgt |
98 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
50507223 |
taactagcaaccagtctatacgtgatttgttggaaataggctaggtgaaaaagcaagagattgtgcctaggtcgtttgctttttttttatcgtacctcgt |
50507322 |
T |
|
| Q |
99 |
agcattttcctttaatatttgatagttctgacaatgatcacaatttactataggaagagcagcatatctgggaaatgagaagagaggacttaacacaaaa |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
50507323 |
agcattttcctttaatatttgatagttctgacaatgatcacaatttactataggaagagcagcatatccgggaaacgagaagagaggacttaacacaaaa |
50507422 |
T |
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| Q |
199 |
ggcttccatgtctaactccacgggtcgtataacacgatctaagagttcaacccagaagttc |
259 |
Q |
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| T |
50507423 |
ggcttccatgtctaactccacgggtcgtataacacgatctaagagttcaacccagaagttc |
50507483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 38 - 166
Target Start/End: Complemental strand, 10784226 - 10784098
Alignment:
| Q |
38 |
aggctaggtgaaaaagcaagagattgtgcctag----gtcgtttgcnnnnnnnatcgtacctcgtagcattttcctttaatatttgatagttctgacaat |
133 |
Q |
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||||||||| ||||||||||||||||||||||| ||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||| |
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| T |
10784226 |
aggctaggtaaaaaagcaagagattgtgcctagctaggtcgtttgcttt----atcatacctcatagcattttcctttaatatttgatagttctgacaat |
10784131 |
T |
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| Q |
134 |
gatcacaatttactataggaagagcagcatatc |
166 |
Q |
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| T |
10784130 |
gatcacaatttactacaggaggagcaacatatc |
10784098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 170 - 244
Target Start/End: Complemental strand, 10784064 - 10783990
Alignment:
| Q |
170 |
gaaatgagaagagaggacttaacacaaaaggcttccatgtctaactccacgggtcgtataacacgatctaagagt |
244 |
Q |
| |
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||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10784064 |
gaaatgagaagagaggacttaactaaaaaagattccatgtctaactccacgggtcgtataacacgatctaagagt |
10783990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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