View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10301_2D_low_44 (Length: 275)
Name: NF10301_2D_low_44
Description: NF10301_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10301_2D_low_44 |
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Alignment Details
Target: chr1 (Bit Score: 99; Significance: 6e-49; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 98 - 204
Target Start/End: Original strand, 50506441 - 50506546
Alignment:
| Q |
98 |
atctcacaatggttcaatgttaaaccaaaaatgtgggattgaacttggtgggaaaactgcttaagcattttagttttagtcaatttatttaaaataaaac |
197 |
Q |
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| T |
50506441 |
atctcacaatggttcaatgttaaac-aaaaatgtgggattgaacttggtgggaaaactgcttaagcattttagttttagtcaatttatttaaaataaaac |
50506539 |
T |
|
| Q |
198 |
atagaaa |
204 |
Q |
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||||||| |
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| T |
50506540 |
atagaaa |
50506546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 93 - 183
Target Start/End: Original strand, 50506311 - 50506401
Alignment:
| Q |
93 |
taggcatctcacaatggttcaatgttaaaccaaaaatgtgggattgaacttggtgggaaaactgcttaagcattttagttttagtcaattt |
183 |
Q |
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| T |
50506311 |
taggcatctcacaatggttcaatgttaaaccaaaaatgtgggattgaacttggtgggaaaactacttaagcattttagttttagtcaattt |
50506401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 50506230 - 50506285
Alignment:
| Q |
12 |
ggacatcaaattttttattttgttaatataaagaccaaatgtattagttgtatatc |
67 |
Q |
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| T |
50506230 |
ggacctcaaattttttattttgttaatataaagaccaaatgtattagttgtatatc |
50506285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 157 - 262
Target Start/End: Complemental strand, 10786431 - 10786327
Alignment:
| Q |
157 |
cttaagcattttagttttagtcaatttatttaaaataaaacatagaaaaacgtgggattgatcttagtgggaaagtctcacttacattcacaagtaacac |
256 |
Q |
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| T |
10786431 |
cttaagaattttagttttagtcaatttatttaaaataaa-catagaaaagcgcgggattgaacttattgggaaagtttcacttacattcacaattaacac |
10786333 |
T |
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| Q |
257 |
aaccaa |
262 |
Q |
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|||||| |
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| T |
10786332 |
aaccaa |
10786327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 10786582 - 10786537
Alignment:
| Q |
23 |
tttttattttgttaatataaagaccaaatgtattagttgtatatcg |
68 |
Q |
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| T |
10786582 |
tttttattttgttaatataaagaccaaaggtattagttatatatcg |
10786537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 127
Target Start/End: Complemental strand, 10786507 - 10786473
Alignment:
| Q |
93 |
taggcatctcacaatggttcaatgttaaaccaaaa |
127 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
10786507 |
taggcatctcacaatggttcaatgttaaaccaaaa |
10786473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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