View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10301_2D_low_46 (Length: 269)

Name: NF10301_2D_low_46
Description: NF10301_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10301_2D_low_46
NF10301_2D_low_46
[»] chr4 (5 HSPs)
chr4 (1-203)||(23817824-23818026)
chr4 (199-254)||(23818690-23818745)
chr4 (199-254)||(23827885-23827940)
chr4 (199-247)||(23823960-23824008)
chr4 (162-195)||(19388933-19388966)
[»] chr2 (3 HSPs)
chr2 (203-254)||(41458435-41458486)
chr2 (207-253)||(41441657-41441703)
chr2 (209-254)||(41448067-41448112)
[»] chr7 (1 HSPs)
chr7 (162-196)||(43434523-43434557)
[»] chr1 (5 HSPs)
chr1 (164-195)||(27723845-27723876)
chr1 (152-196)||(3497235-3497279)
chr1 (163-191)||(27737006-27737034)
chr1 (156-196)||(40494258-40494298)
chr1 (164-196)||(50187309-50187341)
[»] chr8 (2 HSPs)
chr8 (167-196)||(30585122-30585151)
chr8 (152-189)||(41953172-41953209)
[»] chr6 (2 HSPs)
chr6 (162-194)||(1960345-1960377)
chr6 (167-195)||(34406440-34406468)
[»] chr5 (1 HSPs)
chr5 (168-196)||(27976386-27976414)


Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 23817824 - 23818026
Alignment:
Q  1 atccaaacttttttagcttaactttttagtcaagtagctcaaccttttgaaaacaactatactcttcttttgatacagtcttgctctatgctgcgacact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23817824 atccaaacttttttagcttaactttttagtcaagtagctcaaccttttgaaaacaactatactcttcttttgatacagtcttgctctatgctgcgacact 23817923  T
Q  101 aaggtgtgtaaggtgttcgatacatattgatatacaatgccaatacaaaaagacacatgttattatattcaatcactttcattttcttaaattattttgt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||    
T  23817924 aaggtgtgtaaggtgttcgatacatattgatatacaatgccaatacaaaacgacacatgttattatattcaatcactttcattttcttaaattattgtgt 23818023  T
Q  201 gta 203  Q
    |||    
T  23818024 gta 23818026  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 199 - 254
Target Start/End: Original strand, 23818690 - 23818745
Alignment:
Q  199 gtgtagacagtgtgttaggagaaggtaattttggatcagtttttaagggttggatt 254  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  23818690 gtgtagacagtgtgttaggagatggtgattttggatcagtttttaagggttggatt 23818745  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 199 - 254
Target Start/End: Original strand, 23827885 - 23827940
Alignment:
Q  199 gtgtagacagtgtgttaggagaaggtaattttggatcagtttttaagggttggatt 254  Q
    |||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  23827885 gtgtggacagtgtgttaggagatggtgattttggatcagtttttaagggttggatt 23827940  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 23823960 - 23824008
Alignment:
Q  199 gtgtagacagtgtgttaggagaaggtaattttggatcagtttttaaggg 247  Q
    ||||||||| |||||||||||| ||  ||||||||||||||||||||||    
T  23823960 gtgtagacattgtgttaggagatggcgattttggatcagtttttaaggg 23824008  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 195
Target Start/End: Complemental strand, 19388966 - 19388933
Alignment:
Q  162 attatattcaatcactttcattttcttaaattat 195  Q
    ||||||||||||||||||||||| ||||||||||    
T  19388966 attatattcaatcactttcatttccttaaattat 19388933  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 254
Target Start/End: Original strand, 41458435 - 41458486
Alignment:
Q  203 agacagtgtgttaggagaaggtaattttggatcagtttttaagggttggatt 254  Q
    ||||| ||||||||||||||||| ||||||| ||||||||||||||||||||    
T  41458435 agacaatgtgttaggagaaggtagttttggagcagtttttaagggttggatt 41458486  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 207 - 253
Target Start/End: Original strand, 41441657 - 41441703
Alignment:
Q  207 agtgtgttaggagaaggtaattttggatcagtttttaagggttggat 253  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||    
T  41441657 agtgtgttaggagaaggtggttttggatcagtttttaagggttggat 41441703  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 254
Target Start/End: Original strand, 41448067 - 41448112
Alignment:
Q  209 tgtgttaggagaaggtaattttggatcagtttttaagggttggatt 254  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||    
T  41448067 tgtgttaggagaaggtgatttttgatcagtttttaagggttggatt 41448112  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 196
Target Start/End: Complemental strand, 43434557 - 43434523
Alignment:
Q  162 attatattcaatcactttcattttcttaaattatt 196  Q
    |||||||||||||||||||||||||||||||||||    
T  43434557 attatattcaatcactttcattttcttaaattatt 43434523  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 195
Target Start/End: Complemental strand, 27723876 - 27723845
Alignment:
Q  164 tatattcaatcactttcattttcttaaattat 195  Q
    ||||||||||||||||||||||||||||||||    
T  27723876 tatattcaatcactttcattttcttaaattat 27723845  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 196
Target Start/End: Original strand, 3497235 - 3497279
Alignment:
Q  152 gacacatgttattatattcaatcactttcattttcttaaattatt 196  Q
    ||||||||| |||||||||||||||||||||| | | ||||||||    
T  3497235 gacacatgtgattatattcaatcactttcattatttaaaattatt 3497279  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 191
Target Start/End: Complemental strand, 27737034 - 27737006
Alignment:
Q  163 ttatattcaatcactttcattttcttaaa 191  Q
    |||||||||||||||||||||||||||||    
T  27737034 ttatattcaatcactttcattttcttaaa 27737006  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 196
Target Start/End: Original strand, 40494258 - 40494298
Alignment:
Q  156 catgttattatattcaatcactttcattttcttaaattatt 196  Q
    ||||| |||| |||||||||||||||||| |||||||||||    
T  40494258 catgtgattaaattcaatcactttcatttgcttaaattatt 40494298  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 196
Target Start/End: Complemental strand, 50187341 - 50187309
Alignment:
Q  164 tatattcaatcactttcattttcttaaattatt 196  Q
    |||||||||||||||| ||||||||||||||||    
T  50187341 tatattcaatcacttttattttcttaaattatt 50187309  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 196
Target Start/End: Original strand, 30585122 - 30585151
Alignment:
Q  167 attcaatcactttcattttcttaaattatt 196  Q
    ||||||||||||||||||||||||||||||    
T  30585122 attcaatcactttcattttcttaaattatt 30585151  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 189
Target Start/End: Original strand, 41953172 - 41953209
Alignment:
Q  152 gacacatgttattatattcaatcactttcattttctta 189  Q
    ||||||||| |||| |||||||||||||||||||||||    
T  41953172 gacacatgtgattacattcaatcactttcattttctta 41953209  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Original strand, 1960345 - 1960377
Alignment:
Q  162 attatattcaatcactttcattttcttaaatta 194  Q
    |||| ||||||||||||||||||||||||||||    
T  1960345 attacattcaatcactttcattttcttaaatta 1960377  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 195
Target Start/End: Complemental strand, 34406468 - 34406440
Alignment:
Q  167 attcaatcactttcattttcttaaattat 195  Q
    |||||||||||||||||||||||||||||    
T  34406468 attcaatcactttcattttcttaaattat 34406440  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 196
Target Start/End: Complemental strand, 27976414 - 27976386
Alignment:
Q  168 ttcaatcactttcattttcttaaattatt 196  Q
    |||||||||||||||||||||||||||||    
T  27976414 ttcaatcactttcattttcttaaattatt 27976386  T

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