View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10301_2D_low_47 (Length: 265)
Name: NF10301_2D_low_47
Description: NF10301_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10301_2D_low_47 |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 20 - 249
Target Start/End: Complemental strand, 33918766 - 33918537
Alignment:
| Q |
20 |
accttaacatgcaaaacaccattttcattcacagtaccaccaatcaccatatcacccttgatcttagcaacaggctttgcctcaccagttatcatactct |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
33918766 |
accttaacatgcaaaacaccattttcattcacagtaccaccaatcaccatatcacccttcatcttagcaacaggctttgcctcaccagttatcatactct |
33918667 |
T |
|
| Q |
120 |
catttacatgactttgtccccaaagaacaaaaccatctgatgctactttcgcgcccggcacaactttgatcacatcattcttctgtatcaacctgctatc |
219 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33918666 |
catttacatgactttgtccccaaacaacaaaaccatctgatgctactttcgcgcccggcacaactttgatcacatcattcttctgtatcaacctgctatc |
33918567 |
T |
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| Q |
220 |
aatttctctttcacctataacatttccctt |
249 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
33918566 |
aatttctctttcacctataacatttccctt |
33918537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 20 - 249
Target Start/End: Complemental strand, 33901240 - 33901011
Alignment:
| Q |
20 |
accttaacatgcaaaacaccattttcattcacagtaccaccaatcaccatatcacccttgatcttagcaacaggctttgcctcaccagttatcatactct |
119 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
33901240 |
accttaacatgcaaaacaccattttcattcacagtaccaccaatcaccatatcacccttcatcttagcaacaggctttgcctcaccagttatcatactct |
33901141 |
T |
|
| Q |
120 |
catttacatgactttgtccccaaagaacaaaaccatctgatgctactttcgcgcccggcacaactttgatcacatcattcttctgtatcaacctgctatc |
219 |
Q |
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|||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33901140 |
catttacatgactttgtccccaaacaacaaaaccatccgatgctactttcgtgcccggcacaactttgatcacatcattcttctgtatcaacctgctatc |
33901041 |
T |
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| Q |
220 |
aatttctctttcacctataacatttccctt |
249 |
Q |
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||||||||||||||||| |||||||||||| |
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| T |
33901040 |
aatttctctttcacctagaacatttccctt |
33901011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 226
Target Start/End: Original strand, 2781550 - 2781755
Alignment:
| Q |
21 |
ccttaacatgcaaaacaccattttcattcacagtaccaccaatcaccatatcacccttgatcttagcaacaggctttgcctcaccagttatcatactctc |
120 |
Q |
| |
|
|||| |||||||| |||||||||||||||| ||| |||||||| || ||||| | || |||||| || || ||||||||| |||||||||||||| |
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| T |
2781550 |
cctttacatgcaagacaccattttcattcaaagttccaccaataacagtatcatctttcctcttagacacgggacgtgcctcacctgttatcatactctc |
2781649 |
T |
|
| Q |
121 |
atttacatgactttgtccccaaagaacaaaaccatctgatgctactttcgcgcccggcacaactttgatcacatcattcttctgtatcaacctgctatca |
220 |
Q |
| |
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||| |||||||| || ||||||| ||| | ||||| || || ||||| || ||||| | || || ||||||||||||||||| | |||||| |||||| |
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| T |
2781650 |
attcacatgactctgcccccaaacaacgagcccatcagaagcaacttttgcacccggaataatcttaatcacatcattcttctgaaccaacctactatca |
2781749 |
T |
|
| Q |
221 |
atttct |
226 |
Q |
| |
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|||||| |
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|
| T |
2781750 |
atttct |
2781755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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