View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10301_2D_low_58 (Length: 229)

Name: NF10301_2D_low_58
Description: NF10301_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10301_2D_low_58
NF10301_2D_low_58
[»] chr6 (13 HSPs)
chr6 (62-193)||(31564986-31565117)
chr6 (66-216)||(33414568-33414718)
chr6 (109-216)||(33269541-33269648)
chr6 (69-216)||(33258194-33258343)
chr6 (89-205)||(33384040-33384156)
chr6 (70-166)||(33278972-33279068)
chr6 (1-56)||(31564907-31564962)
chr6 (66-216)||(33395052-33395204)
chr6 (66-163)||(33280358-33280455)
chr6 (159-203)||(33293034-33293078)
chr6 (1-43)||(33414746-33414788)
chr6 (2-43)||(28873045-28873086)
chr6 (3-43)||(33293154-33293194)
[»] chr2 (2 HSPs)
chr2 (66-216)||(17447831-17447981)
chr2 (1-43)||(17447760-17447803)
[»] scaffold0428 (3 HSPs)
scaffold0428 (69-216)||(2315-2464)
scaffold0428 (70-166)||(15185-15281)
scaffold0428 (66-163)||(13798-13895)


Alignment Details
Target: chr6 (Bit Score: 120; Significance: 2e-61; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 62 - 193
Target Start/End: Original strand, 31564986 - 31565117
Alignment:
Q  62 agttgctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaa 161  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31564986 agttgctgaaggaagaatcggtacatacattcacgattcacgcattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaa 31565085  T
Q  162 ttcaaggagtttgttcatgatcttgcaatgca 193  Q
    ||||||||||| ||||||||||||||||||||    
T  31565086 ttcaaggagttggttcatgatcttgcaatgca 31565117  T

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Target: chr6; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 66 - 216
Target Start/End: Complemental strand, 33414718 - 33414568
Alignment:
Q  66 gctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattca 165  Q
    |||||||||||||||| |||||||||||||||| |||  ||| ||||||||||||||||||| ||||||||||||||| | || ||||||||||||||||    
T  33414718 gctgaaggaagaatcggtacatacattcacgatgcacgtattggtgttctaattgaagtgaactgtgaaacggactttgttggcagaagtgagaaattca 33414619  T
Q  166 aggagtttgttcatgatcttgcaatgcaagttgctgcttgtccacaggttc 216  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  33414618 aggagttggttgatgatcttgcaatgcaagttgctgcttgtccacaggttc 33414568  T

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Target: chr6; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 109 - 216
Target Start/End: Complemental strand, 33269648 - 33269541
Alignment:
Q  109 gtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaagttgctgcttgtcc 208  Q
    ||||||||||||||||||| |||||||| |||||| | || |||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||    
T  33269648 gtgttctaattgaagtgaactgtgaaaccgactttgttggcagaagtgagaaattcaagaagttggttgatgatcttgcaatgcaagttgctgcttgtcc 33269549  T
Q  209 acaggttc 216  Q
    ||||||||    
T  33269548 acaggttc 33269541  T

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Target: chr6; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 69 - 216
Target Start/End: Complemental strand, 33258343 - 33258194
Alignment:
Q  69 gaaggaagaatcgctacata-cattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaag 167  Q
    ||||||||||||| |||||| || || ||||||||||||| |||||||||||||||||||  ||||||| |||||| | || |||||||||||||| |||    
T  33258343 gaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatttaag 33258244  T
Q  168 gagtttgttcatgatcttgcaatgcaagttgctgctt-gtccacaggttc 216  Q
    ||||| ||| | ||||||||||||||||| |||  || ||||||||||||    
T  33258243 gagttggttgacgatcttgcaatgcaagtagctttttggtccacaggttc 33258194  T

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Target: chr6; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 89 - 205
Target Start/End: Complemental strand, 33384156 - 33384040
Alignment:
Q  89 cattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgca 188  Q
    ||||||| ||||||||||  ||||||||||||||||||| ||| |||| |||||| |||| |||||||||||| | |||||||| ||| |||||||||||    
T  33384156 cattcactattcacacatcggtgttctaattgaagtgaactgtcaaaccgactttgtcggcagaagtgagaaaattaaggagttggttgatgatcttgca 33384057  T
Q  189 atgcaagttgctgcttg 205  Q
    |||||||| ||||||||    
T  33384056 atgcaagtggctgcttg 33384040  T

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Target: chr6; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 70 - 166
Target Start/End: Complemental strand, 33279068 - 33278972
Alignment:
Q  70 aaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaa 166  Q
    |||||||||| | |||||||||||||||||||||||| ||||||||||||||||| || |||||||| ||||||   || |||||| ||||||||||    
T  33279068 aaggaagaattggtacatacattcacgattcacacatcagtgttctaattgaagttaactgtgaaaccgactttgatggcagaagttagaaattcaa 33278972  T

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Target: chr6; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 31564962 - 31564907
Alignment:
Q  1 ggatgagagacccttttttctgaggtatgcttgcgccttttcatgcaagtgttggt 56  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31564962 ggatgagagacccttttttctgaggtatgcttgcgccttttcatgtaagtgttggt 31564907  T

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Target: chr6; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 66 - 216
Target Start/End: Complemental strand, 33395204 - 33395052
Alignment:
Q  66 gctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcgg--tagaagtgagaaatt 163  Q
    |||||||||||||||| || ||||||| ||||| ||| |||   |||||| ||||||||||| |||||||| |||||| | ||   |||||||| | |||    
T  33395204 gctgaaggaagaatcggtaaatacattgacgatgcacgcatctatgttctgattgaagtgaactgtgaaaccgactttgttggcacagaagtgatagatt 33395105  T
Q  164 caaggagtttgttcatgatcttgcaatgcaagttgctgcttgtccacaggttc 216  Q
    ||||||||| |||  ||||||| ||||||||   |||||||||||||||||||    
T  33395104 caaggagttggttgctgatctttcaatgcaataggctgcttgtccacaggttc 33395052  T

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Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 163
Target Start/End: Complemental strand, 33280455 - 33280358
Alignment:
Q  66 gctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaatt 163  Q
    ||||||||| |||||  ||| |||||||||||||||| |||| || ||||| ||||||| || ||||| || |||||| | || ||||||||||||||    
T  33280455 gctgaaggaggaatcagtacctacattcacgattcacgcattggttttctatttgaagttaactgtgatactgacttttttggcagaagtgagaaatt 33280358  T

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Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 33293078 - 33293034
Alignment:
Q  159 aaattcaaggagtttgttcatgatcttgcaatgcaagttgctgct 203  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||    
T  33293078 aaattcaaggagttggttaatgatcttgcaatgcaagttgctgct 33293034  T

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Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 33414746 - 33414788
Alignment:
Q  1 ggatgagagacccttttttctgaggtatgcttgcgccttttca 43  Q
    |||||||||||||||||| ||||| ||||||||||||||||||    
T  33414746 ggatgagagaccctttttcctgagatatgcttgcgccttttca 33414788  T

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Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 28873086 - 28873045
Alignment:
Q  2 gatgagagacccttttttctgaggtatgcttgcgccttttca 43  Q
    |||||||||||||||| |||||||||||||| ||||||||||    
T  28873086 gatgagagacccttttatctgaggtatgcttacgccttttca 28873045  T

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Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 33293154 - 33293194
Alignment:
Q  3 atgagagacccttttttctgaggtatgcttgcgccttttca 43  Q
    |||||||||||||||||||||||||||||| | ||||||||    
T  33293154 atgagagacccttttttctgaggtatgctttcaccttttca 33293194  T

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Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 66 - 216
Target Start/End: Original strand, 17447831 - 17447981
Alignment:
Q  66 gctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattca 165  Q
    |||||||||||||||| |||||||||||||||| ||| |||  ||| |||||||||| |||| | |||||| |||||| | || ||||| |||| |||||    
T  17447831 gctgaaggaagaatcggtacatacattcacgatgcacgcatcggtggtctaattgaattgaactttgaaaccgactttgttggcagaagggagagattca 17447930  T
Q  166 aggagtttgttcatgatcttgcaatgcaagttgctgcttgtccacaggttc 216  Q
    ||||||| ||| ||||||||||||||||||| ||||||| |||||||||||    
T  17447931 aggagttggttgatgatcttgcaatgcaagtggctgcttttccacaggttc 17447981  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 17447803 - 17447760
Alignment:
Q  1 ggatgagagaccc-ttttttctgaggtatgcttgcgccttttca 43  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  17447803 ggatgagagaccccttttttctgaggtatgcttgcgccttttca 17447760  T

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Target: scaffold0428 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 69 - 216
Target Start/End: Complemental strand, 2464 - 2315
Alignment:
Q  69 gaaggaagaatcgctacata-cattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaag 167  Q
    ||||||||||||| |||||| || || ||||||||||||| |||||||||||||||||||  ||||||| |||||| | || |||||||||||||| |||    
T  2464 gaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatttaag 2365  T
Q  168 gagtttgttcatgatcttgcaatgcaagttgctgctt-gtccacaggttc 216  Q
    ||||| ||| | ||||||||||||||||| |||  || ||||||||||||    
T  2364 gagttggttgacgatcttgcaatgcaagtagctttttggtccacaggttc 2315  T

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Target: scaffold0428; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 70 - 166
Target Start/End: Original strand, 15185 - 15281
Alignment:
Q  70 aaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaa 166  Q
    |||||||||| | |||||||||||||||||||||||| ||||||||||||||||| || |||||||| ||||||   || |||||| ||||||||||    
T  15185 aaggaagaattggtacatacattcacgattcacacatcagtgttctaattgaagttaactgtgaaaccgactttgatggcagaagttagaaattcaa 15281  T

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Target: scaffold0428; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 163
Target Start/End: Original strand, 13798 - 13895
Alignment:
Q  66 gctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaatt 163  Q
    ||||||||| |||||  ||| |||||||||||||||| |||| || ||||| ||||||| || ||||| || |||||| | || ||||||||||||||    
T  13798 gctgaaggaggaatcagtacctacattcacgattcacgcattggttttctatttgaagttaactgtgatactgacttttttggcagaagtgagaaatt 13895  T

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