View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10301_2D_low_6 (Length: 583)
Name: NF10301_2D_low_6
Description: NF10301_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10301_2D_low_6 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 540; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 20 - 583
Target Start/End: Original strand, 19642760 - 19643323
Alignment:
| Q |
20 |
gaaagttccattccctttaggcaaaccatcttcccaatagccatcatacctattcccattactccaaacaaatgaccctttaccccaaatactcccattc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19642760 |
gaaagttccattccctttaggcaaaccatcttcccaatagccatcatacctattcccattactccaaacaaatgaccctttaccccaaatactcccattc |
19642859 |
T |
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| Q |
120 |
ctccattccccaatataatatttctcatctttccactcatatctcccttgtccatcctgcaaacctcttctccattctccctcatacttatctccattcg |
219 |
Q |
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| T |
19642860 |
ctccattccccaatataatatttctcatctttccactcatatctcccttgtccatcctgcaaacctcttctccattctccctcatacttatctccattcg |
19642959 |
T |
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| Q |
220 |
aataactcgtctcaccatgaccatgtttcaaattcattacccattgtcccttataagtatccccattagtagaagtgtatgcacctattccatccatata |
319 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19642960 |
aataactcgtctcaccatgaccatgtttcaaattcatcacccattgtcctttataagtatccccattagtagaagtgtatgcacctattccatccatata |
19643059 |
T |
|
| Q |
320 |
accactcttgaactccccttcataagctggccctgaaggccaagtgaaccttccctttcccatagtttttcctttgaaccattctccaacatatatacat |
419 |
Q |
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| T |
19643060 |
accactcttgaactccccttcataagctggccctgaaggccaagtgaaccttccctttcccatagtttttcctttgaaccattctccaacatatatacat |
19643159 |
T |
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| Q |
420 |
ccatctgtccataagtacttccctttcccatgtgggaagttatcagcccattctcctttgtagtaatctccattaggtagaaccctctctgcatggtata |
519 |
Q |
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| T |
19643160 |
ccatctgtccataagtacttccctttcccatgtgggaagttatcagcccattctcctttatagtaatctccattgggtagaaccctctctgcatggtata |
19643259 |
T |
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| Q |
520 |
cttctgtttcatccttgctttcttcttcatgatctacatgttgtgaagctatatatgttgatcc |
583 |
Q |
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| T |
19643260 |
cttctgtttcatccttgctttcttcttcatgatctccatgttgtgaagctacatatgttgatcc |
19643323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 105; Significance: 4e-52; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 21 - 493
Target Start/End: Complemental strand, 35256975 - 35256503
Alignment:
| Q |
21 |
aaagttccattccctttaggcaaaccatcttcccaatagccatcatacctattcccattactccaaacaaatgaccctttaccccaaatactcccattcc |
120 |
Q |
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||||||||||| ||||| |||||||||||||||||| || ||| | ||||| |||||| ||||| |||||| |||||||||||||| |||||||| |
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| T |
35256975 |
aaagttccatttccttttggcaaaccatcttcccaaatcccttcaaagctattaccattaggccaaaaaaatgatcctttaccccaaattatcccattct |
35256876 |
T |
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| Q |
121 |
tccattccccaatataatatttctcatctttccactcatatctcccttgtccatcctgcaaacctcttctccattctccctcatacttatctccattcga |
220 |
Q |
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| T |
35256875 |
tccattcaccaatataatgactcatatctctccattcatacctcccttttccatcttgcacccctctcctccaatcaccttcataccaatcaccattcac |
35256776 |
T |
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| Q |
221 |
ataactcgtctcaccatgaccatgtttcaaattcattacccattgtcccttataagtatccccattagtagaagtgtatgcacctattccatccatataa |
320 |
Q |
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| T |
35256775 |
ataactcttatacccatgaccatgttttaaattcatcacccattgtcctttatatgtctcaccattaatacccgtgtatgttcctacaccatccatgaaa |
35256676 |
T |
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| Q |
321 |
ccactcttgaactccccttcataagctggccctgaaggccaagtgaaccttccctttcccatagtttttcctttgaaccattctccaacatatatacatc |
420 |
Q |
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||| ||||||| || |||||||| | | |||||||||||| |||| || || |||||| | ||||||||||||||||||| |||||| || || || | |
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| T |
35256675 |
ccagtcttgaattcgccttcatatgtagcgcctgaaggccaactgaatctaccttttccctttgtttttcctttgaaccattgtccaacgtacatgcacc |
35256576 |
T |
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| Q |
421 |
catctgtccataagtacttccctttcccatgtgggaagttatcagcccattctcctttgtagtaatctccatt |
493 |
Q |
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| T |
35256575 |
catccgtccatagatattttccttctccatgtggaaaattttctgcccattgtcctgtatagtaatcaccatt |
35256503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 14520864 - 14520916
Alignment:
| Q |
27 |
ccattccctttaggcaaaccatcttcccaatagccatcatacctattcccatt |
79 |
Q |
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| T |
14520864 |
ccattccctttaggaaaaccttcttcccaacaaccatcatatctattcccatt |
14520916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 4193288 - 4193236
Alignment:
| Q |
27 |
ccattccctttaggcaaaccatcttcccaatagccatcatacctattcccatt |
79 |
Q |
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| T |
4193288 |
ccattccctttcggaaaaccattttcccaacaaccatcatacctattcccatt |
4193236 |
T |
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