View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10301_high_11 (Length: 206)
Name: NF10301_high_11
Description: NF10301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10301_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 5e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 13 - 187
Target Start/End: Complemental strand, 1178052 - 1177878
Alignment:
| Q |
13 |
gcacagaaaccatacagggaatcatcatacttagagtgacagaatgagggtgcagggggtataaggtggacctgtttagttgttgggttccatagaatca |
112 |
Q |
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| T |
1178052 |
gcacagaaaccatacagggaatcatcatacttagagtgacagaatgagggtgcagggggtataaggtggacctgtttagttgttgggttccatagaatca |
1177953 |
T |
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| Q |
113 |
agtgaccaagagttgaattcctataaaaagcttttaagaagaaaacaccattgcaattgccatatgtttcgattc |
187 |
Q |
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| T |
1177952 |
agtgaccaagagttgaattcctataaaaagcttttaagaagaaaacaccattgcaattgccatatgtttcaattc |
1177878 |
T |
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Target: chr1; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 13 - 178
Target Start/End: Original strand, 6840828 - 6840996
Alignment:
| Q |
13 |
gcacagaaaccatacagggaatcatcatacttagagtgacagaatgagggtgcagg-gggtataaggtggacctgtttagttgttgggttccatagaatc |
111 |
Q |
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| T |
6840828 |
gcacaaaaaccatacaaggaatcatcatatttaga-tcagagaatgagggtgcaggaggggatacggtgaacttgtttaactgttgggttccatagaatc |
6840926 |
T |
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| Q |
112 |
aagtgaccaaga---gttgaattcctataaaaagcttttaagaagaaaacaccattgcaattgccatatg |
178 |
Q |
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| T |
6840927 |
aagtgaccaagatttgttgaatgccaataaaaagcttttaaaaagaaaacaccattgcaattgccatatg |
6840996 |
T |
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