View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10301_high_2 (Length: 415)
Name: NF10301_high_2
Description: NF10301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10301_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 21 - 399
Target Start/End: Original strand, 33861582 - 33861960
Alignment:
| Q |
21 |
ttcccttatacacactacactaccaactcaatttcttcaacttttttgcagtgaaaatcagtattgataataatggagatcaaagctggtttgtcagcac |
120 |
Q |
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| T |
33861582 |
ttcccttatacacactacactaccaactcaatttcttcaacttttttgcagtgaaaatcagtgttgataataatggagatcaaagctggtttgtcagcac |
33861681 |
T |
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| Q |
121 |
tcgtcactggtggtgcttctggaatcggtaacacacaaatcatattttctttaatattcaattattccaacaaccttcgttcggttaatatcaaattcat |
220 |
Q |
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| T |
33861682 |
tcgtcactggtggtgcttctggaatcggtaacacacaaatcatattttctttaatattcaattattccaacaaccttcgttcggttaatatcaaattcat |
33861781 |
T |
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| Q |
221 |
tcaattattatacaggtaaaggtcttgtgctagctcttgcagagaaaggtgtgtttatcacaattgttgatttttctgaagaaaaaggaagagaaaccgc |
320 |
Q |
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| T |
33861782 |
tcaattattatacaggtaaaggtcttgtgctagctcttgcagagaaaggtgtgtttatcacaattgttgatttttctgaagaaaaaggaagagaaaccgc |
33861881 |
T |
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| Q |
321 |
aacccttgtggagaaaattaacaccaagtttcatcctagcttacaccatccatctgtcttgtttgtcaaatgtgatgtc |
399 |
Q |
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| T |
33861882 |
aacccttgtggagaaaattaataccaagtttcatcctaacttacaccatccatctgtcttgtttgtcaaatgtgatgtc |
33861960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 231 - 392
Target Start/End: Original strand, 33851698 - 33851859
Alignment:
| Q |
231 |
tacaggtaaaggtcttgtgctagctcttgcagagaaaggtgtgtttatcacaattgttgatttttctgaagaaaaaggaagagaaaccgcaacccttgtg |
330 |
Q |
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| T |
33851698 |
tacaggtaaaggtcttgtgctagctcttgcagagaaaggtgtatttataacaattgttgatttttctgaagaaaaaggaagagaaaccgcaacccttgtg |
33851797 |
T |
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| Q |
331 |
gagaaaattaacaccaagtttcatcctagcttacaccatccatctgtcttgtttgtcaaatg |
392 |
Q |
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| T |
33851798 |
gagaaaattaataccaagtttcatcctaacttacaccatccatctgtcttgtttgtcaaatg |
33851859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 92 - 163
Target Start/End: Original strand, 33851472 - 33851543
Alignment:
| Q |
92 |
aatggagatcaaagctggtttgtcagcactcgtcactggtggtgcttctggaatcggtaacacacaaatcat |
163 |
Q |
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| T |
33851472 |
aatggagatcaaagctggtttgtcagcactcgttactggtggtgcttctggaatcggtaacacaccaatcat |
33851543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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