View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10301_high_7 (Length: 253)

Name: NF10301_high_7
Description: NF10301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10301_high_7
NF10301_high_7
[»] chr7 (13 HSPs)
chr7 (112-240)||(22069953-22070081)
chr7 (180-240)||(660947-661007)
chr7 (114-240)||(22080712-22080838)
chr7 (47-153)||(22088373-22088476)
chr7 (120-240)||(20351945-20352065)
chr7 (112-236)||(22063484-22063608)
chr7 (112-159)||(16839562-16839609)
chr7 (32-79)||(6865064-6865111)
chr7 (112-159)||(16846645-16846692)
chr7 (117-159)||(18326068-18326110)
chr7 (112-166)||(20140992-20141046)
chr7 (112-149)||(6864997-6865034)
chr7 (113-166)||(20126362-20126415)
[»] chr1 (1 HSPs)
chr1 (114-240)||(15961072-15961198)


Alignment Details
Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 112 - 240
Target Start/End: Original strand, 22069953 - 22070081
Alignment:
Q  112 tactattgagcaatttgtgattatttcacttaatttgggcaccgagacgcattctgagttactccctcctcgaggtttccaagaaatgccatttgttata 211  Q
    |||||||||| |||||||||||||||||||| ||||||| |||||||| ||| || ||||  | |||||||  |||||| | ||| ||||||||||||||    
T  22069953 tactattgaggaatttgtgattatttcacttgatttgggtaccgagacacatactaagttgttgcctcctcacggtttcgatgaagtgccatttgttata 22070052  T
Q  212 ccaaatctaagtgtgttaaaggattgtct 240  Q
    |||||||||||||| ||||||||||||||    
T  22070053 ccaaatctaagtgttttaaaggattgtct 22070081  T

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Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 661007 - 660947
Alignment:
Q  180 ctcgaggtttccaagaaatgccatttgttataccaaatctaagtgtgttaaaggattgtct 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  661007 ctcgaggtttccaagaaatgccatttgttataccaaatctaagtgtgttaaaggattgtct 660947  T

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Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 114 - 240
Target Start/End: Original strand, 22080712 - 22080838
Alignment:
Q  114 ctattgagcaatttgtgattatttcacttaatttgggcaccgagacgcattctgagttactccctcctcgaggtttccaagaaatgccatttgttatacc 213  Q
    ||||||| |||||| |||||||||||||| |||||||||||||||| ||| || |||| |  |||||||   |||||   ||| | || |||||||||||    
T  22080712 ctattgaacaatttatgattatttcacttgatttgggcaccgagacacatgctaagtttcggcctcctcacagtttcgttgaagttccctttgttatacc 22080811  T
Q  214 aaatctaagtgtgttaaaggattgtct 240  Q
    |||||||||| ||||||||||||||||    
T  22080812 aaatctaagtatgttaaaggattgtct 22080838  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 153
Target Start/End: Original strand, 22088373 - 22088476
Alignment:
Q  47 ggtagttttaattggttggcaattcgcaattacaacgacgaggactacgaatgcaaggatattgatactattgagcaatttgtgattatttcacttaatt 146  Q
    |||||| |||||||||||||||||| ||||||||  |  || || ||  | ||||||| ||||   |||||||||||||||||||||||||||||| |||    
T  22088373 ggtagtgttaattggttggcaattcacaattacattggtgatgattataattgcaagggtatt---actattgagcaatttgtgattatttcacttgatt 22088469  T
Q  147 tgggcac 153  Q
    |||||||    
T  22088470 tgggcac 22088476  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 120 - 240
Target Start/End: Original strand, 20351945 - 20352065
Alignment:
Q  120 agcaatttgtgattatttcacttaatttgggcaccgagacgcattctgagttactccctcctcgaggtttccaagaaatgccatttgttataccaaatct 219  Q
    ||||||||||||| ||||| ||| |||||| ||| || |||||||||  | |  | || |||| |||||||  |||| ||||| | ||| ||||| ||||    
T  20351945 agcaatttgtgatcatttctcttgatttggacactgaaacgcattctctgcttttgccacctcaaggtttcacagaagtgccaatcgttgtaccatatct 20352044  T
Q  220 aagtgtgttaaaggattgtct 240  Q
    |||||||||||||||||||||    
T  20352045 aagtgtgttaaaggattgtct 20352065  T

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Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 112 - 236
Target Start/End: Original strand, 22063484 - 22063608
Alignment:
Q  112 tactattgagcaatttgtgattatttcacttaatttgggcaccgagacgcattctgagttactccctcctcgaggtttccaagaaatgccatttgttata 211  Q
    |||||||| |||||||||||||||||||||| |||||||||| ||| |  || || | ||  | |||||||  ||||||   ||| | ||||||||||||    
T  22063484 tactattgggcaatttgtgattatttcacttgatttgggcactgaggcatatactaaattgtttcctcctcatggtttcagtgaagtaccatttgttata 22063583  T
Q  212 ccaaatctaagtgtgttaaaggatt 236  Q
    ||||| |||||||| ||||| ||||    
T  22063584 ccaaaactaagtgtcttaaatgatt 22063608  T

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Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 159
Target Start/End: Complemental strand, 16839609 - 16839562
Alignment:
Q  112 tactattgagcaatttgtgattatttcacttaatttgggcaccgagac 159  Q
    |||| |||||||||||||||||||||||||| |||||||||| |||||    
T  16839609 tactgttgagcaatttgtgattatttcacttgatttgggcacggagac 16839562  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 79
Target Start/End: Complemental strand, 6865111 - 6865064
Alignment:
Q  32 gttgttcatcttagtggtagttttaattggttggcaattcgcaattac 79  Q
    ||||| |||||| |||||||| ||| ||||||||||||||||||||||    
T  6865111 gttgtgcatcttggtggtagtgttacttggttggcaattcgcaattac 6865064  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 159
Target Start/End: Complemental strand, 16846692 - 16846645
Alignment:
Q  112 tactattgagcaatttgtgattatttcacttaatttgggcaccgagac 159  Q
    |||| |||||||||||||||||||||| ||| |||||||||| |||||    
T  16846692 tactgttgagcaatttgtgattatttctcttgatttgggcacggagac 16846645  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 159
Target Start/End: Original strand, 18326068 - 18326110
Alignment:
Q  117 ttgagcaatttgtgattatttcacttaatttgggcaccgagac 159  Q
    |||||||||||| ||||||||||||| |||||||||| |||||    
T  18326068 ttgagcaatttgcgattatttcacttgatttgggcacggagac 18326110  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 166
Target Start/End: Complemental strand, 20141046 - 20140992
Alignment:
Q  112 tactattgagcaatttgtgattatttcacttaatttgggcaccgagacgcattct 166  Q
    |||| |||| |||||||||||| |||| ||| |||||||||||||||| ||||||    
T  20141046 tactcttgaccaatttgtgattgtttctctttatttgggcaccgagacacattct 20140992  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 6865034 - 6864997
Alignment:
Q  112 tactattgagcaatttgtgattatttcacttaatttgg 149  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  6865034 tactattgagcaatttgagattatttcacttcatttgg 6864997  T

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Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 166
Target Start/End: Complemental strand, 20126415 - 20126362
Alignment:
Q  113 actattgagcaatttgtgattatttcacttaatttgggcaccgagacgcattct 166  Q
    |||||| ||||||||||||||||||| ||| | |||||||| ||||| ||||||    
T  20126415 actattcagcaatttgtgattatttcccttgacttgggcactgagacacattct 20126362  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 114 - 240
Target Start/End: Original strand, 15961072 - 15961198
Alignment:
Q  114 ctattgagcaatttgtgattatttcacttaatttgggcaccgagacgcattctgagttactccctcctcgaggtttccaagaaatgccatttgttatacc 213  Q
    ||||||| || ||||||||| |||||||| |||||||||| ||||| ||| || ||||    ||||||  ||||||| | ||| | |||| ||||| |||    
T  15961072 ctattgaacattttgtgattgtttcacttgatttgggcactgagacacatactcagttggcacctcctaaaggtttcaatgaagttccatatgttaaacc 15961171  T
Q  214 aaatctaagtgtgttaaaggattgtct 240  Q
    ||||||||||||||||||  |||||||    
T  15961172 aaatctaagtgtgttaaataattgtct 15961198  T

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