View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10301_low_1 (Length: 918)
Name: NF10301_low_1
Description: NF10301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10301_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 539; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 214 - 904
Target Start/End: Original strand, 53788240 - 53788930
Alignment:
| Q |
214 |
cataaatccatggaaatacattagtattatttgctagtaagtactcggttgtattgcagtgtttcattcatcatcttaaactaatagagttgaactttgg |
313 |
Q |
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| T |
53788240 |
cataaatccatggaaatacattagtattatttgctagtaagtactcggttgtattgcagtgtttcattcatcatcttaaactaatagagttgaactttgg |
53788339 |
T |
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| Q |
314 |
ctaagaaaacgtggtgagtaatggtacccactcactctatctttgctatgatgtgaagtgtgagaaccggggatcccaatataagtgagtcgaacaccac |
413 |
Q |
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| T |
53788340 |
ctgagaaaccgtggtgagtaatggtacccactcactctatctttgctatgatgtgaagtgtgagaaccgggaatcccaatataagtgagtccaacaccac |
53788439 |
T |
|
| Q |
414 |
actttaacataaaaccttaagatattgaattttatggatcctataatttataaaattcaatccccannnnnnnaagtaaggtgaaacttttaattcacac |
513 |
Q |
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| T |
53788440 |
actttaacctaaaaccttaagatattgga-tttatgggtcctataatttataaaattcaatccccatttttctaagtaacgtgaaacttttaattcacac |
53788538 |
T |
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| Q |
514 |
tttctacacaacaatcttcgtctcatgtataaatataagtatgtcaattcattatgctatcactcaaggaagttttttcatttacatacacttacttgca |
613 |
Q |
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| T |
53788539 |
tttctacacaacaatcttcttctcatgtgtaaatataagtatgtcaattcattatgctcccacttaaggaagttttttcatctacatacacttacttgca |
53788638 |
T |
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| Q |
614 |
tcgttggtgtgacattcagcagagcacgccgtcaaaacgcattgatagaaagactttcaacacaaa-aaccgatcaaattcttattaaatcatgatgtaa |
712 |
Q |
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| T |
53788639 |
ccgttggtgtgacattcagtggagcacgccatcaaaacactgtgatagaaagactttcaacacaaagaaccgatcaaattcttattaaatcatcatgtaa |
53788738 |
T |
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| Q |
713 |
gataccacctttgtgtcaagatggggagtccggaggatcatcctcctcgtgacccaacacttttgaatctccttacacgttcgctccacccacacatcta |
812 |
Q |
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| T |
53788739 |
gataccacctttgcaaaaagatggggagtccggaggattatcctcctcgtgacccaacacttttgaatctccttacacgttcgctccacccacacatcta |
53788838 |
T |
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| Q |
813 |
ggcctttttgtatgattcatcaataccatactatgtcatttgattgtcgtcttctttttattctattattccaatatacttctctcattcat |
904 |
Q |
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| T |
53788839 |
ggcctttttgtatgattcatcaataccataccatgtcatttgattgtcgtcttctttttattctattattccactatacttctctcattcat |
53788930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 16 - 165
Target Start/End: Original strand, 53788091 - 53788241
Alignment:
| Q |
16 |
attccatctatctaggacttcgttaaattcatttgcaaatgcttgttgggaaaatcaactg-ttccattatttgagtatttgaataattttctttccaat |
114 |
Q |
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| T |
53788091 |
attccatctatccaggacttcgttaaattcatttgcaaatgcttgttgggaaaatcaaccggttccattatttgagtattgcaataatttttttcccaat |
53788190 |
T |
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| Q |
115 |
atttaatcacttccagcatcttgattcaatttgacattctcttccattaca |
165 |
Q |
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| T |
53788191 |
atttaatcacttccagcatcttgattcaatttaacattctcttctattaca |
53788241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 5273172 - 5273237
Alignment:
| Q |
120 |
atcacttccagcatcttgattcaatttgacattctcttccattacaatctcgttcaggggtggaac |
185 |
Q |
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| T |
5273172 |
atcacttgcagaatcttcattcattctcacattctcttccattacaatctcattaagggatggaac |
5273237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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