View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10301_low_10 (Length: 277)
Name: NF10301_low_10
Description: NF10301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10301_low_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 17 - 265
Target Start/End: Complemental strand, 35917377 - 35917129
Alignment:
| Q |
17 |
ataaacataatatttatagtgtgtatcgtgtgaaaacttctatgttagttggatcatgacactccacgttcgacttccatttcctttcctcgatatgact |
116 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
|
|
| T |
35917377 |
ataaacataatatttatagtgtgtatggtgtgaaaacttctatgttagttggatcatgacactccacgttcgacttccatttcctttccttgatatgatt |
35917278 |
T |
|
| Q |
117 |
tgttgatagtatccttggtgcgtgcgcaactccaaagtttgtcagtgatgtttcgagtatagattgagggtttatcgcatcattgtctagtcccgctaaa |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
35917277 |
tgttgatagtatccttggtgcgtgcgcaactccaaagtttgtcagtgatgtttcgagtatagattgagggtttatcgcatcattgtctaatcccgctaaa |
35917178 |
T |
|
| Q |
217 |
tttcgacttagttctgagttagtgaccttgagaaagaattagttccctt |
265 |
Q |
| |
|
|||| ||| | |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
35917177 |
tttcaactcaattctaagttagtgaccttgagaaagaattagttccctt |
35917129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 114
Target Start/End: Complemental strand, 35413949 - 35413894
Alignment:
| Q |
59 |
tgttagttggatcatgacactccacgttcgacttccatttcctttcctcgatatga |
114 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||| ||||||| ||||||| |||| |
|
|
| T |
35413949 |
tgttagtgggatcatgacaccccacgttcgacttcaatttcctctcctcgacatga |
35413894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University