View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10301_low_12 (Length: 260)
Name: NF10301_low_12
Description: NF10301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10301_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 16 - 131
Target Start/End: Original strand, 34770725 - 34770840
Alignment:
| Q |
16 |
caactaggagtgtattatagtcagatcgaaaagaattttgagcagtcatgtgttgtgagatcttcaaagtcgtggattgatgtgcaacttcatagataag |
115 |
Q |
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| T |
34770725 |
caactaggagtgtattatagttagatcgaaaagaattttgagcagtcatgtgttgtgagatcttcaaagtcgtggattgatgtgcaacttcatagataag |
34770824 |
T |
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| Q |
116 |
tattaacaattattag |
131 |
Q |
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|||||||||||||||| |
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| T |
34770825 |
tattaacaattattag |
34770840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 16 - 131
Target Start/End: Original strand, 34781670 - 34781785
Alignment:
| Q |
16 |
caactaggagtgtattatagtcagatcgaaaagaattttgagcagtcatgtgttgtgagatcttcaaagtcgtggattgatgtgcaacttcatagataag |
115 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34781670 |
caactaggagtgtattatagttagatcgaaaagaattttgagcagtcatgtgttgtgagatcttcaaagtcgtggattgatgtgcaacttcatagataag |
34781769 |
T |
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| Q |
116 |
tattaacaattattag |
131 |
Q |
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|||||||||||||||| |
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| T |
34781770 |
tattaacaattattag |
34781785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 138 - 247
Target Start/End: Original strand, 34770907 - 34771016
Alignment:
| Q |
138 |
gtgagtcaaactattgttttgatattcttataattannnnnnnaaatgttgatgttcttgtatatatcttaagttctgtcatgtttgtatatttctaggt |
237 |
Q |
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|||||||||||||||||||||| ||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34770907 |
gtgagtcaaactattgttttgacgttcgtattattatttttttaaatgttgatgttcttgtatatatcttaagttctgtcatgtttgtatatttctaggt |
34771006 |
T |
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| Q |
238 |
attttatttt |
247 |
Q |
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|||||||||| |
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| T |
34771007 |
attttatttt |
34771016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 138 - 247
Target Start/End: Original strand, 34781852 - 34781961
Alignment:
| Q |
138 |
gtgagtcaaactattgttttgatattcttataattannnnnnnaaatgttgatgttcttgtatatatcttaagttctgtcatgtttgtatatttctaggt |
237 |
Q |
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|||||||||||||||||||||| ||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34781852 |
gtgagtcaaactattgttttgacgttcgtattattatttttttaaatgttgatgttcttgtatatatcttaagttctgtcatgtttgtatatttctaggt |
34781951 |
T |
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| Q |
238 |
attttatttt |
247 |
Q |
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|||||||||| |
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| T |
34781952 |
attttatttt |
34781961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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