View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10301_low_15 (Length: 250)
Name: NF10301_low_15
Description: NF10301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10301_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 6e-95; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 34782040 - 34782282
Alignment:
| Q |
1 |
gctgatatggtgtggttgaggtaagtttcgttgaaggtttcagtgttcgtttgacgattccttcgcagcagacttcccataaaggataatctaatgtgtc |
100 |
Q |
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| T |
34782040 |
gctgacatggtgtggttgaggcaagtttcgttgaaggtttcagtgttcgtttgacgactccttcgcaaccgactttccataaaggataatctaatgcgtc |
34782139 |
T |
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| Q |
101 |
agagagtacttcatcatgacaatacagcttgtgttggagggtgtggcaaccaggaaacggcggttcacttccttctcatatgcgacatttttggtagcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||| || |||||||||||||||||| |
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| T |
34782140 |
agagagtacttcatcatgacaatacagcttgtgttggagggtgtggcaggcaggagacggcagttcacttccttctcagatccgacatttttggtagcat |
34782239 |
T |
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| Q |
201 |
atgacaccttatttatcggtgggttggtatttctttcatctctc |
244 |
Q |
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| T |
34782240 |
atgacaccttattta-cgttgggttggtatttctttcatttctc |
34782282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 34771095 - 34771337
Alignment:
| Q |
1 |
gctgatatggtgtggttgaggtaagtttcgttgaaggtttcagtgttcgtttgacgattccttcgcagcagacttcccataaaggataatctaatgtgtc |
100 |
Q |
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| T |
34771095 |
gctgacatggcgtggttgaggcaagtttcgttgaaggtttcagtgttcgtttgacgactccttcgcaaccgactttccacaaaggataatctaatgcgtc |
34771194 |
T |
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| Q |
101 |
agagagtacttcatcatgacaatacagcttgtgttggagggtgtggcaaccaggaaacggcggttcacttccttctcatatgcgacatttttggtagcat |
200 |
Q |
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| T |
34771195 |
agagagtacttcatcatgacaatacagcttgtgttggagggtgtggcaggcaggagacggcagttcacttccttctcagatccgacatttttggtagcat |
34771294 |
T |
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| Q |
201 |
atgacaccttatttatcggtgggttggtatttctttcatctctc |
244 |
Q |
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| T |
34771295 |
atgacaccttattta-cgttgggttggtatttctttcatttctc |
34771337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 239
Target Start/End: Complemental strand, 31293801 - 31293743
Alignment:
| Q |
181 |
tgcgacatttttggtagcatatgacaccttatttatcggtgggttggtatttctttcat |
239 |
Q |
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| T |
31293801 |
tgcgacatctttggtaacttatggcaccttatttatcagtgggttgatatttctttcat |
31293743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 69 - 239
Target Start/End: Original strand, 20188072 - 20188242
Alignment:
| Q |
69 |
cagacttcccataaaggataatctaatgtgtcagagagtacttcatcatgacaatacagcttgtgttggagggtgtggcaaccaggaaacggcggttcac |
168 |
Q |
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| T |
20188072 |
cagactccccacaaaaaataatctattgcgtcggagagtacttcatcatgacaatacatcttgtgttggagggtgtgacaaacaggagacggcggttcac |
20188171 |
T |
|
| Q |
169 |
ttccttctcatatgcgacatttttggtagcatatgacaccttatttatcggtgggttggtatttctttcat |
239 |
Q |
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||||||||| |||||||| ||| | |||| |||| ||||||||||||| |||| |||||||||||||||| |
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| T |
20188172 |
ttccttctccgatgcgacactttcgttagcttatggcaccttatttatcagtggattggtatttctttcat |
20188242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 244
Target Start/End: Original strand, 13450936 - 13451053
Alignment:
| Q |
127 |
gcttgtgttggagggtgtggcaaccaggaaacggcggttcacttccttctcatatgcgacatttttggtagcatatgacaccttatttatcggtgggttg |
226 |
Q |
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|||||||| |||||||| |||| || ||| || ||||||| | |||||| ||| ||||| |||||||| | || ||||||||||||| |||||||| |
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| T |
13450936 |
gcttgtgtaggagggtgcggcatcccggagacaacggttcatcttcttctctgatgtgacatctttggtagtttgtggcaccttatttatcagtgggttg |
13451035 |
T |
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| Q |
227 |
gtatttctttcatctctc |
244 |
Q |
| |
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|||||||||||| |||| |
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| T |
13451036 |
atatttctttcatatctc |
13451053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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