View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10301_low_17 (Length: 241)
Name: NF10301_low_17
Description: NF10301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10301_low_17 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 29589022 - 29589262
Alignment:
| Q |
1 |
agcataggcatcatagtgccctataaatcatattaaatgaaatatttcttaattatgatatgccattgtttgagannnnnnnaaataaattaaaaacaaa |
100 |
Q |
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| T |
29589022 |
agcataggcatcatagtaccctataaatcatattaaatgaaatatttcttaattatgatatgccattgttcgagatttttttaaataaattaaaaacaaa |
29589121 |
T |
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| Q |
101 |
taacaaaaatctagcagaactcacacctgagaatgaatcaagtcaccattatgtgattcatcagttgaatcatcgatggaaggctgaacattttgagaca |
200 |
Q |
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| T |
29589122 |
taacaaaaatctagcagaactcacacctgagaatgaatcaagtcaccattatgtgattcatcagttgaatcatcgatggaaggctgaacattttgagaca |
29589221 |
T |
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| Q |
201 |
tggattcaagtgaaccttcaccatttactgattcttgtatc |
241 |
Q |
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| T |
29589222 |
tggattcaagtgaaccttcaccatttactgattcttgtatc |
29589262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 140 - 223
Target Start/End: Original strand, 17980431 - 17980514
Alignment:
| Q |
140 |
aagtcaccattatgtgattcatcagttgaatcatcgatggaaggctgaacattttgagacatggattcaagtgaaccttcacca |
223 |
Q |
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| T |
17980431 |
aagttacctttatgtgattcaacatttggatcatccatggaaagctgaatattttgagacatggagtcaagaggaccttcacca |
17980514 |
T |
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