View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10301_low_2 (Length: 472)

Name: NF10301_low_2
Description: NF10301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10301_low_2
NF10301_low_2
[»] chr7 (19 HSPs)
chr7 (18-288)||(661013-661283)
chr7 (247-444)||(20351799-20351996)
chr7 (254-440)||(20361375-20361562)
chr7 (249-439)||(20360836-20361026)
chr7 (251-440)||(20374676-20374865)
chr7 (165-282)||(22088209-22088326)
chr7 (170-290)||(22080477-22080597)
chr7 (170-318)||(20133612-20133760)
chr7 (242-440)||(20140991-20141189)
chr7 (170-282)||(22063263-22063375)
chr7 (170-282)||(22069732-22069844)
chr7 (77-114)||(22080390-22080427)
chr7 (77-128)||(20338458-20338509)
chr7 (76-126)||(20351628-20351678)
chr7 (77-114)||(22063176-22063213)
chr7 (77-114)||(22069645-22069682)
chr7 (81-114)||(22088131-22088164)
chr7 (169-209)||(15572347-15572387)
chr7 (76-128)||(20126623-20126675)
[»] chr4 (3 HSPs)
chr4 (173-290)||(11971308-11971425)
chr4 (74-128)||(2910531-2910585)
chr4 (381-429)||(11971166-11971214)
[»] scaffold0097 (1 HSPs)
scaffold0097 (240-277)||(16720-16757)
[»] chr2 (1 HSPs)
chr2 (240-277)||(20712881-20712918)


Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 661283 - 661013
Alignment:
Q  18 gttcttgcaatggattgctttgtttgcaaggtttttctttcaccaacggatacgaaatgtggcttcgtttttggaacccggccacaaggacaatatctaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  661283 gttcttgcaatggattgctttgtttgcaaggtttttctttcaccaacggataccaaatgtggcttcgtttttggaacccggccacaaggacaatatctaa 661184  T
Q  118 aaaactagggtcttgtcgtgttgacggtctagttcactattctaatctcaaatttggttatgatagttcaaccgacatttataaggtggtgtacttcctt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  661183 aaaactagggtcttgtcgtgttgacggtctagttcactattctaatctcaaatttggttatgatagttcaaccgacatttataaggtggtgtacttcctt 661084  T
Q  218 ccggagacaacaaacgtaagaattttcattttgggcgataatgtttggagaaatattcaaaattctcccgt 288  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||    
T  661083 ccggagacaacaaacgtaagaattttcaatttaggcgataatgtttggagaaatattcaaaattcccccgt 661013  T

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Target: chr7; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 247 - 444
Target Start/End: Original strand, 20351799 - 20351996
Alignment:
Q  247 tttgggcgataatgtttggagaaatattcaaaattctcccgtggatcatggttattcgatgaatgttgtgaacctacatgagagtattaattggctggaa 346  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  20351799 tttgggcgataatgtttggagaaatattcaaaattctcccgtggatcatggttattcgatgaatgttgtgaacctacatgagattattaattggctggaa 20351898  T
Q  347 attcgcgattacaactctcattatgaccgcaacaatattactatcaagcaatttgtgatcatttctcttgatttggacactgaaacgcattctctgct 444  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20351899 attcgcgattacaactctcattatgaccgcaacaatattactatcaagcaatttgtgatcatttctcttgatttggacactgaaacgcattctctgct 20351996  T

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Target: chr7; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 254 - 440
Target Start/End: Complemental strand, 20361562 - 20361375
Alignment:
Q  254 gataatgtttggagaaatattcaaaattctcccgtggatcatggttattcgatgaatgttgtgaacctacatgagagtattaattggctggaaattcgcg 353  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||| ||||| ||| ||    
T  20361562 gataatatttggagaaatattcaaaattctcccgtggatcatggttattcgatgaatgttgtgaacctaagtgagagtattagttggttggaatttcacg 20361463  T
Q  354 attacaactctcattatgaccg-caacaatattactatcaagcaatttgtgatcatttctcttgatttggacactgaaacgcattctc 440  Q
    ||| |  ||||| ||||||  | |||||||||||||||  | |||||||||||||||||||||||||||| ||| ||||||| |||||    
T  20361462 atttccgctctcgttatgatggccaacaatattactattcatcaatttgtgatcatttctcttgatttgggcaccgaaacgctttctc 20361375  T

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Target: chr7; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 249 - 439
Target Start/End: Original strand, 20360836 - 20361026
Alignment:
Q  249 tgggcgataatgtttggagaaatattcaaaattctcccgtggatcatggttattcgatgaatgttgtgaacctacatgagagtattaattggctggaaat 348  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||   |||||||||| |||||| | ||||    
T  20360836 tgggcgataatgtttggagaaatgttcaaaattctcccttggatcatggttattcgataaatgttgtgaacctgagtgagagtattcattggccgaaaat 20360935  T
Q  349 tcgcgattacaactctcattatgaccgcaacaatattactatcaagcaatttgtgatcatttctcttgatttggacactgaaacgcattct 439  Q
    | |||||||| || ||||||||||  ||||||| |||||| |  | |||||||| || |||||||| ||||||| ||||||||| ||||||    
T  20360936 ttgcgattactacactcattatgattgcaacaaaattactcttcaacaatttgtcattatttctctcgatttgggcactgaaacacattct 20361026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 251 - 440
Target Start/End: Complemental strand, 20374865 - 20374676
Alignment:
Q  251 ggcgataatgtttggagaaatattcaaaattctcccgtggatcatggttattcgatgaatgttgtgaacctacatgagagtattaattggctggaaattc 350  Q
    ||||||||||||||| ||||||||||||| || ||| ||||||||||||||||| | |||||||  ||| |   | |||||||||||||||||| ||| |    
T  20374865 ggcgataatgtttggcgaaatattcaaaactcccccttggatcatggttattcgttaaatgttgcaaacttgggtaagagtattaattggctggcaatcc 20374766  T
Q  351 gcgattacaactctcattatgaccgcaacaatattactatcaagcaatttgtgatcatttctcttgatttggacactgaaacgcattctc 440  Q
      ||||||  ||| ||||||||  ||||||||||||||||  |||||||| | || ||||||||||||||||  |||||||| |||||||    
T  20374765 atgattaccgctcccattatgattgcaacaatattactattcagcaatttatcattatttctcttgatttgggtactgaaacacattctc 20374676  T

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Target: chr7; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 165 - 282
Target Start/End: Original strand, 22088209 - 22088326
Alignment:
Q  165 tcaaatttggttatgatagttcaaccgacatttataaggtggtgtacttccttccggagacaacaaacgtaagaattttcattttgggcgataatgtttg 264  Q
    |||| ||||||||||||| |||||| || | ||||||||||||||| |||  ||| ||||||||||| |||||| |||| | |||||||| |||||||||    
T  22088209 tcaagtttggttatgataattcaacagaaacttataaggtggtgtatttcactccagagacaacaaatgtaagagtttttagtttgggcgttaatgtttg 22088308  T
Q  265 gagaaatattcaaaattc 282  Q
    ||||||||| ||| ||||    
T  22088309 gagaaatatccaagattc 22088326  T

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Target: chr7; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 170 - 290
Target Start/End: Original strand, 22080477 - 22080597
Alignment:
Q  170 tttggttatgatagttcaaccgacatttataaggtggtgtacttccttccggagacaacaaacgtaagaattttcattttgggcgataatgtttggagaa 269  Q
    ||||||||||||| |||||| || | ||||||||||||||| |||  |||  | ||||||||||||||| |||||| ||| ||| | ||||||||||||     
T  22080477 tttggttatgataattcaacagaaacttataaggtggtgtatttcactccaaaaacaacaaacgtaagagttttcagtttaggcaacaatgtttggagag 22080576  T
Q  270 atattcaaaattctcccgtgg 290  Q
    ||||||||||||| |||||||    
T  22080577 atattcaaaattcccccgtgg 22080597  T

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Target: chr7; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 170 - 318
Target Start/End: Complemental strand, 20133760 - 20133612
Alignment:
Q  170 tttggttatgatagttcaaccgacatttataaggtggtgtacttccttccggagacaacaaacgtaagaattttcattttgggcgataatgtttggagaa 269  Q
    ||||| |||| || ||||||||||| ||| ||||| ||||| ||  ||||  | |||||||| |||||  |||||| ||| ||||||||| |||||||||    
T  20133760 tttggctatgttaattcaaccgacacttacaaggtcgtgtatttagttccaaatacaacaaatgtaagtgttttcagttttggcgataatatttggagaa 20133661  T
Q  270 atattcaaaattctcccgtggatcatggttattcgatgaatgttgtgaa 318  Q
     ||||||| ||||||||||| |||||| || || ||| |||||||||||    
T  20133660 ctattcaagattctcccgtgaatcatgattgttggataaatgttgtgaa 20133612  T

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Target: chr7; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 242 - 440
Target Start/End: Complemental strand, 20141189 - 20140991
Alignment:
Q  242 ttcattttgggcgataatgtttggagaaatattcaaaattctcccgtggatcatggttattcgatgaatgttgtgaacctacatgagagtattaattggc 341  Q
    |||| ||||||||||||| ||||||||| ||||||| ||||||| |||||||||| ||| | ||| ||| ||||||| || |||||  |||||| ||||     
T  20141189 ttcagtttgggcgataatatttggagaactattcaagattctcctgtggatcatgattactggatcaattttgtgaatctgcatgactgtattagttggt 20141090  T
Q  342 tggaaattcgcgattacaactctcattatgaccgcaacaatattactatcaagcaatttgtgatcatttctcttgatttggacactgaaacgcattctc 440  Q
    ||| ||||||| ||||     ||| ||||||   ||||||||||||| |  | |||||||||||  |||||||| |||||| ||| || || |||||||    
T  20141089 tggcaattcgcaattattctgctcgttatgatttcaacaatattactcttgaccaatttgtgattgtttctctttatttgggcaccgagacacattctc 20140991  T

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Target: chr7; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 170 - 282
Target Start/End: Original strand, 22063263 - 22063375
Alignment:
Q  170 tttggttatgatagttcaaccgacatttataaggtggtgtacttccttccggagacaacaaacgtaagaattttcattttgggcgataatgtttggagaa 269  Q
    ||||||||||||| |||||| || | ||||||||||||||| |||  ||   |||||||||| |||||| |||| | |||||||| ||||||||||||||    
T  22063263 tttggttatgataattcaacagaaacttataaggtggtgtatttcactcgaaagacaacaaatgtaagagtttttagtttgggcgttaatgtttggagaa 22063362  T
Q  270 atattcaaaattc 282  Q
    |||| ||| ||||    
T  22063363 atatccaagattc 22063375  T

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Target: chr7; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 170 - 282
Target Start/End: Original strand, 22069732 - 22069844
Alignment:
Q  170 tttggttatgatagttcaaccgacatttataaggtggtgtacttccttccggagacaacaaacgtaagaattttcattttgggcgataatgtttggagaa 269  Q
    ||||||||||||| |||||| || | ||||||||||||||| |||  ||   |||||||||| |||||| |||| | |||||||| ||||||||||||||    
T  22069732 tttggttatgataattcaacagaaacttataaggtggtgtatttcactcgaaagacaacaaatgtaagagtttttagtttgggcgttaatgtttggagaa 22069831  T
Q  270 atattcaaaattc 282  Q
    |||| ||| ||||    
T  22069832 atatccaagattc 22069844  T

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Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 77 - 114
Target Start/End: Original strand, 22080390 - 22080427
Alignment:
Q  77 tggcttcgtttttggaacccggccacaaggacaatatc 114  Q
    |||||||||||||||||||| |||||||||||||||||    
T  22080390 tggcttcgtttttggaacccagccacaaggacaatatc 22080427  T

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Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 128
Target Start/End: Original strand, 20338458 - 20338509
Alignment:
Q  77 tggcttcgtttttggaacccggccacaaggacaatatctaaaaaactagggt 128  Q
    |||||||||||||||||||| |||||||||| |||||||  |||| ||||||    
T  20338458 tggcttcgtttttggaaccctgccacaaggaaaatatctgcaaaattagggt 20338509  T

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Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 126
Target Start/End: Original strand, 20351628 - 20351678
Alignment:
Q  76 gtggcttcgtttttggaacccggccacaaggacaatatctaaaaaactagg 126  Q
    |||| |||| ||||||||||  |||||||||||||||||| ||||||||||    
T  20351628 gtggattcgcttttggaaccaagccacaaggacaatatctgaaaaactagg 20351678  T

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Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 114
Target Start/End: Original strand, 22063176 - 22063213
Alignment:
Q  77 tggcttcgtttttggaacccggccacaaggacaatatc 114  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  22063176 tggcttcgtttttggaacccagccacaaggataatatc 22063213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 114
Target Start/End: Original strand, 22069645 - 22069682
Alignment:
Q  77 tggcttcgtttttggaacccggccacaaggacaatatc 114  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  22069645 tggcttcgtttttggaacccagccacaaggataatatc 22069682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 114
Target Start/End: Original strand, 22088131 - 22088164
Alignment:
Q  81 ttcgtttttggaacccggccacaaggacaatatc 114  Q
    ||||| ||||||||||||||||||||||||||||    
T  22088131 ttcgtgtttggaacccggccacaaggacaatatc 22088164  T

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Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 169 - 209
Target Start/End: Complemental strand, 15572387 - 15572347
Alignment:
Q  169 atttggttatgatagttcaaccgacatttataaggtggtgt 209  Q
    |||||||||||||| ||||||||||| ||| ||||||||||    
T  15572387 atttggttatgataattcaaccgacacttacaaggtggtgt 15572347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 76 - 128
Target Start/End: Complemental strand, 20126675 - 20126623
Alignment:
Q  76 gtggcttcgtttttggaacccggccacaaggacaatatctaaaaaactagggt 128  Q
    |||||||||||||||||| || |||||| || |||||||| ||||| ||||||    
T  20126675 gtggcttcgtttttggaatccagccacatgggcaatatctgaaaaattagggt 20126623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 173 - 290
Target Start/End: Complemental strand, 11971425 - 11971308
Alignment:
Q  173 ggttatgatagttcaaccgacatttataaggtggtgtacttccttccggagacaacaaacgtaagaattttcattttgggcgataatgtttggagaaata 272  Q
    |||||||||| ||||| | ||| |||||| | |||||| ||| |||  || ||||||| ||||||| |||||| | | ||| |||||||||||||||  |    
T  11971425 ggttatgataattcaagcaacacttataaagcggtgtatttcattctagatacaacaatcgtaagagttttcagtataggcaataatgtttggagaagca 11971326  T
Q  273 ttcaaaattctcccgtgg 290  Q
    ||||||||||||| ||||    
T  11971325 ttcaaaattctcctgtgg 11971308  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 74 - 128
Target Start/End: Original strand, 2910531 - 2910585
Alignment:
Q  74 atgtggcttcgtttttggaacccggccacaaggacaatatctaaaaaactagggt 128  Q
    |||||||| ||||| |||||||| |||||||||||||||||||| ||| ||||||    
T  2910531 atgtggctccgtttgtggaaccctgccacaaggacaatatctaataaattagggt 2910585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 381 - 429
Target Start/End: Complemental strand, 11971214 - 11971166
Alignment:
Q  381 atattactatcaagcaatttgtgatcatttctcttgatttggacactga 429  Q
    ||||||| ||||||||||||||||| ||||| |||||||| | ||||||    
T  11971214 atattacaatcaagcaatttgtgattatttcacttgattttggcactga 11971166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 16757 - 16720
Alignment:
Q  240 ttttcattttgggcgataatgtttggagaaatattcaa 277  Q
    |||||| |||||||||||||||||||||||||||||||    
T  16757 ttttcactttgggcgataatgtttggagaaatattcaa 16720  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 20712918 - 20712881
Alignment:
Q  240 ttttcattttgggcgataatgtttggagaaatattcaa 277  Q
    |||||| |||||||||||||||||||||||||||||||    
T  20712918 ttttcactttgggcgataatgtttggagaaatattcaa 20712881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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