View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10301_low_20 (Length: 231)
Name: NF10301_low_20
Description: NF10301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10301_low_20 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 53838518 - 53838746
Alignment:
| Q |
1 |
attggtaatcactctttgtcctgcattgtatcttcttaattattaagctttaactttggttatagacttctgggtctaagagacaataactttttcacat |
100 |
Q |
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| T |
53838518 |
attggtaatcactctttgtcatgcattgtatcttcttatttattaagctttaactttggttatagacttctgggtctaaaaggcaataactttttcacat |
53838617 |
T |
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| Q |
101 |
tatgtacatagccagaagnnnnnnnntagtactaattgcaaaaaataattgtttgataaccattttcacacttcagtgcatctttgtatgcttcctccac |
200 |
Q |
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| T |
53838618 |
tatgtacatagccagaa-aaaaaaaatagtactaattgcaaaaaataattgtttgataaccattttcacacttcagtgcatctttgtatgcttcctccac |
53838716 |
T |
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| Q |
201 |
ttgttagttgcagtgtcaagaaatttgattc |
231 |
Q |
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||| ||||||||||| ||||||||||||||| |
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| T |
53838717 |
ttggtagttgcagtg-caagaaatttgattc |
53838746 |
T |
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